View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_9 (Length: 399)
Name: NF12093_low_9
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 34437101 - 34437469
Alignment:
| Q |
1 |
tctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaattttgaatcttccagatgaaacctttgtgtttggtaacctcgaggta |
100 |
Q |
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| T |
34437101 |
tctccatctgtctttgtcagtttgcttgctttcattaatctcagcagcaacaattttgaatcttccagatgaaacctttgtgtttggtaacctcgaggta |
34437200 |
T |
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| Q |
101 |
actttctttaagctggttccaaagaatgatgaatttggaactgaagctactgctccagagctattcaaactcaactgcaatatcacagtattatcctatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437201 |
actttctttaagctggttccaaagaatgatgaacttggaactgaagctactgctccagagctattcaaactcaactgcaatatcacagtattatcctatg |
34437300 |
T |
|
| Q |
201 |
agtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatgtgtcggtagcatgttggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437301 |
agtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatgtgtcggtagcatgttggt |
34437400 |
T |
|
| Q |
301 |
gtatgagacaaatacatgttagacactagacacgactttaatctaaagtatcagttctacttaggaattagccactcttttg |
382 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34437401 |
gtatgagacaaatacatgttagacactagacac-------------agtatcagttctacttaggaattagccactcttttg |
34437469 |
T |
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