View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_high_1 (Length: 733)
Name: NF12094_high_1
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Complemental strand, 26410853 - 26410402
Alignment:
| Q |
10 |
agaagcaaaggaaaagaatgagaatcagttacatgccaatgaaacacattcaacttattcatactcatagcttcaatagttcttaacaaatccttcactg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410853 |
agaatcaaaggaaaagaatgagaatcagttacatgccaatgaaacacattcaacttattcatactcatagcttcaatagttcttaacaaatccttcactg |
26410754 |
T |
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| Q |
110 |
gatagtagtttcttgaagtatctaacatgataccgcgatgaccgaacaacggcgcgtcgttaacacgcacgttcacagctacgcgcgttgggtttcccca |
209 |
Q |
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| T |
26410753 |
gatagtagtttcttgaagtatctaacataataccgcgatgaccgaacaacggcgcgtcgttaacacgcacgttcacagccacgcgcgttgggtttcccca |
26410654 |
T |
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| Q |
210 |
tgcaagctgtgagaatgtttctaaaccatgcatggctccccatgaagttacggcggttaaggtggcggtgggagttgtgattattaacgtgtaggattcg |
309 |
Q |
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| T |
26410653 |
tgcaagctgtgagaatgtttctaaaccatgcatggctccccatgaagttacagcggttaaggtggcggtgggagttgtgattattaacgtgtaggattcg |
26410554 |
T |
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| Q |
310 |
tcggtggcgtggtttagttctgtgtttgggtttgttatggttattgttagggtttgaagaggtggtagattgtttgagaggtttgtttttggtgggatta |
409 |
Q |
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| T |
26410553 |
tcggtggcgtggtttagttctgtgtttgggtttgttatggttattgttagggtttgaagaggtggtagattgtttgagaggtttgtttttggtgggatta |
26410454 |
T |
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| Q |
410 |
agggatggttgtgttctgttttgatgaggtttgtgtagcgggatatggcggc |
461 |
Q |
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| T |
26410453 |
agggatggttgtgttctgttttgatgaggtttgtgtagcgagatatggcggc |
26410402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 543 - 632
Target Start/End: Complemental strand, 26410320 - 26410231
Alignment:
| Q |
543 |
ccacgtgaggtttcttggttttggccatatgtttaatgatgttgttgaaaatggaaagaacaggaataagaatagtaattgtagtaacat |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410320 |
ccacgtgaggtttcttggttttggccatatgtttaatgatgttgttgaaaatggaaagaacaggaataagaatagtaattgtagtaacat |
26410231 |
T |
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