View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_high_11 (Length: 265)
Name: NF12094_high_11
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30325832 - 30325582
Alignment:
| Q |
1 |
gggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagagaagtgggttgag |
100 |
Q |
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| T |
30325832 |
gggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagagaagtgggttgag |
30325733 |
T |
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| Q |
101 |
agtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgttcaatgtgtgatttaaatttgcgatac |
200 |
Q |
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| T |
30325732 |
agtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgttcaatgtgtgatttaaatttgcgatac |
30325633 |
T |
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| Q |
201 |
tgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaag |
251 |
Q |
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| T |
30325632 |
tgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaag |
30325582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 30337279 - 30337226
Alignment:
| Q |
191 |
tttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtgg |
244 |
Q |
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| T |
30337279 |
tttgcgatacttaagaagatgaaagtaggagtaacggcaaacaacgccgggtgg |
30337226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 30337439 - 30337385
Alignment:
| Q |
31 |
ggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaa |
85 |
Q |
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| T |
30337439 |
ggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaa |
30337385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 30333040 - 30332972
Alignment:
| Q |
32 |
gttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagagaagtgggttgag |
100 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||||||||| ||||| | ||||||||| |
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| T |
30333040 |
gttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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