View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_high_14 (Length: 260)
Name: NF12094_high_14
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3304498 - 3304248
Alignment:
| Q |
1 |
tagtggtacattggtatagaaatgagaaaatttaactcagcattcagatagaaaggagattctcccgcttctttaattattagtttttcttgaatggtct |
100 |
Q |
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| T |
3304498 |
tagtggtacattggtatagaaatgagaaaatttaactcagcattcagatagaaagtagattctcccgcttctttaattattagtttttcttgaatggtct |
3304399 |
T |
|
| Q |
101 |
tagaaagaggtaacttattgttttccaatttccactatttcaattttacagtctcagttttagaactgattttttcccattctctacttacatatacctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3304398 |
tagaaagaggtaacttattgttttccaatttccactaattcaattttacggtctcagttttagaactgattttttcccattctctacttacatatacctc |
3304299 |
T |
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| Q |
201 |
tactgaaaatggttgatggaagatgggacagccatctacataggcctttgc |
251 |
Q |
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| T |
3304298 |
tactgaaaatggttgatggaagatgggacagccatctacataggcctttgc |
3304248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 3292582 - 3292410
Alignment:
| Q |
20 |
aaatgagaaaatttaactcagcattcagatagaaaggagattctcccgcttc---tttaattattagtttttcttgaatggtcttagaaagaggtaactt |
116 |
Q |
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|||||||||||||||| || |||||||||||||||| |||||| || |||| ||||||||||| |||| ||| |||||||||||| |||||||| || |
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| T |
3292582 |
aaatgagaaaatttaagtctacattcagatagaaaggggattctgccacttcgtctttaattattacttttccttcaatggtcttagacagaggtaaatt |
3292483 |
T |
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| Q |
117 |
attgttttccaatttccactatttcaattttacagtctcagttttagaactgattttt-tcccattctctacttacata |
194 |
Q |
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| T |
3292482 |
attgttttccaatttctaat------aacttacagtcttagttttagaactgatttttgtcccattctctagttacata |
3292410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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