View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_high_16 (Length: 230)
Name: NF12094_high_16
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7605617 - 7605761
Alignment:
| Q |
1 |
aatcaatattgagaaacaatttatatttggnnnnnnngcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatac |
100 |
Q |
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| T |
7605617 |
aatcaatattgagaaacaatttatatttggaaaaaaagcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatac |
7605716 |
T |
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| Q |
101 |
aacagatcggaagcaagatttgaaggaggaggcagcaacgttgaa |
145 |
Q |
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| T |
7605717 |
aacagatcggaagcaagatttgaaggaggaggcagcaacgttgaa |
7605761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 3620737 - 3620686
Alignment:
| Q |
39 |
caacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtg |
90 |
Q |
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| T |
3620737 |
caacaaaaatgaaacccaagaaaaactagagatggaaccccataagaaagtg |
3620686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 8942388 - 8942298
Alignment:
| Q |
39 |
caacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg |
129 |
Q |
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| T |
8942388 |
caacaaaaatgaaacgcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg |
8942298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 38714829 - 38714774
Alignment:
| Q |
38 |
gcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtga |
93 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
38714829 |
gcaacaaaaatgaaactcaagtaaaactaaagatagaaccccacaagagagtgtga |
38714774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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