View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_high_3 (Length: 514)
Name: NF12094_high_3
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 39883421 - 39882944
Alignment:
| Q |
20 |
aatattatgacgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgttcatgtccttccaaagaatccaca |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39883421 |
aatatcatgacgtgattgttaaccgaactccatagtttatctcccatatatgactgatgagaaaatatgagcatgttcatgtccttccaaagagtccaca |
39883322 |
T |
|
| Q |
120 |
ccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaagttcgagaccaaagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39883321 |
ccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccttgcacgtcaagttccatttaatccaaacaaaaagttcgagaccaaagaa |
39883222 |
T |
|
| Q |
220 |
cttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcatgcatcacaagctttatgtttcattgatatagacca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39883221 |
cttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcatacatcacaagctttatgtttcattgatatagacca |
39883122 |
T |
|
| Q |
320 |
atcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactaccttcatgttgtgagaccacataa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
39883121 |
atcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactacttgcatgttgtgagaccacataa |
39883022 |
T |
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| Q |
420 |
ggcatgatattccttattctataagccaagatttttcaaattattttatagctcgcgttacataaagcaatgggtctg |
497 |
Q |
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| T |
39883021 |
ggcatgatattccttattctataagccaagattttttaaattattttatagctcacgttacataaagcaatgggtctg |
39882944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 40645364 - 40645543
Alignment:
| Q |
101 |
tccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaa |
200 |
Q |
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|||||| ||||| ||||||||| |||||||| || ||| ||||||| |||| || |||| || | ||| | ||| | |||||||||| ||||||||||| |
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| T |
40645364 |
tccttcgaaagatcccacaccatgactccaaagaaaatataccaatcccaag-taaattatcattctccttacacgttaagttccattcaatccaaacaa |
40645462 |
T |
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| Q |
201 |
aaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctc |
282 |
Q |
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| T |
40645463 |
aaagatcgagcctggagaactaactccaatattcttcttttatgaccct-tgaccaaagctccttagtgtcctcacaatctc |
40645543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 36826512 - 36826426
Alignment:
| Q |
118 |
caccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaag |
204 |
Q |
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||||||||||||||| || ||||| |||||||||| || |||| |||| ||| | ||| |||||||| ||| ||||||| ||||||| |
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| T |
36826512 |
caccataactccaaagaagatagaacaatctcaagttacattaccaatgtccttacacgtcaagttctattcaatccaagcaaaaag |
36826426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 42874702 - 42874636
Alignment:
| Q |
29 |
acgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgt |
95 |
Q |
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| T |
42874702 |
acgttattgttaactgaattccatagtttatcttccatatttgaccaataagaaaatatgagcatgt |
42874636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 24352009 - 24352080
Alignment:
| Q |
74 |
tgatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaa |
145 |
Q |
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| T |
24352009 |
tgatgagaaaatatgaacatgttcctatcattctaaagaacccacaccataacttcaaagaagatagaccaa |
24352080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 42502497 - 42502625
Alignment:
| Q |
75 |
gatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgca |
174 |
Q |
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||||||||||||||||||| || || |||||||||| || |||||||| ||||| || || ||| |||||| ||||||| |||| |||| | | || |
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| T |
42502497 |
gatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactctgaagaagataaaccaattccaaggtagattaccaatgtaattaca |
42502596 |
T |
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| Q |
175 |
cttcaagttccatttaatccaaacaaaaa |
203 |
Q |
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| T |
42502597 |
cgtcaagttccattcaatttaaacaaaaa |
42502625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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