View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_low_13 (Length: 262)
Name: NF12094_low_13
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 33391131 - 33390898
Alignment:
| Q |
19 |
gctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaa |
118 |
Q |
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| T |
33391131 |
gctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaa |
33391032 |
T |
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| Q |
119 |
tgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33391031 |
tgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaactt |
33390932 |
T |
|
| Q |
219 |
aactttggaatgtgtagctgctggagtacctatg |
252 |
Q |
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| T |
33390931 |
aactttggaaagtgtagctgctggagtacctatg |
33390898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 33383009 - 33383119
Alignment:
| Q |
105 |
atttgagaaaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcat |
204 |
Q |
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| T |
33383009 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
33383108 |
T |
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| Q |
205 |
tgtggatggaa |
215 |
Q |
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||||||||||| |
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| T |
33383109 |
tgtggatggaa |
33383119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 33401878 - 33401768
Alignment:
| Q |
142 |
agaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaatgtgtagctgctg |
241 |
Q |
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||||||||| ||||||| ||||||||| | | ||| | ||| |||||| || ||||||||||||||||||||| |||||| ||| |||| ||||| |
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| T |
33401878 |
agaggttgggctcctcagcttttgattttggagcatgaggctgttggagggtttatgactcattgtggatggaactcaactttagaaggtgtgtgtgctg |
33401779 |
T |
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| Q |
242 |
gagtacctatg |
252 |
Q |
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||||||||||| |
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| T |
33401778 |
gagtacctatg |
33401768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 18989374 - 18989603
Alignment:
| Q |
20 |
ctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaat |
119 |
Q |
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||||||||||| |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||| ||||||| | |||||||||||||| ||| |
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| T |
18989374 |
ctatgggactcaaagcatcgtggaaagatttagttttggtggtgaagaaaaagagagaagatagagaaa---aaggtctaccagaatttgagaaaataat |
18989470 |
T |
|
| Q |
120 |
gaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaactta |
219 |
Q |
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| T |
18989471 |
gaaaggaaaaggactaattataagaggttggcctcttcaacttttgatttttcaacataaagctattggagcatttgtgactcattgtggatggaactta |
18989570 |
T |
|
| Q |
220 |
actttggaatgtgtagctgctggagtacctatg |
252 |
Q |
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||||||||| |||| |||||||||||||||||| |
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| T |
18989571 |
actttggaaagtgtggctgctggagtacctatg |
18989603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 19001807 - 19001964
Alignment:
| Q |
21 |
tatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaatg |
120 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| || | ||||||||||||||| ||| |
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| T |
19001807 |
tatgggactcaaagcatcggggaaagattttgtttgggtggtgaagaaaaagagagaagatatagagaa-aaaggactaccagaatttgagaaaaggatg |
19001905 |
T |
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| Q |
121 |
aaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataa |
179 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19001906 |
aaaggaaacggactaattataagaggttggtctcctcaacttttgattcttcaacataa |
19001964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 27688804 - 27688702
Alignment:
| Q |
113 |
aaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatg |
212 |
Q |
| |
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|||||| | ||||||| |||||||||||||||||||||||||| ||| | |||||||| ||||| |||| || || ||| ||||||| ||||| ||||| |
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| T |
27688804 |
aaagaacggaaggaaaaggactaattataagaggttggtctccacaagtgatgattcttgaacatgaagcaatcggggcatttgtgacgcattgcggatg |
27688705 |
T |
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| Q |
213 |
gaa |
215 |
Q |
| |
|
||| |
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| T |
27688704 |
gaa |
27688702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 14710151 - 14710100
Alignment:
| Q |
163 |
ttgattcttcaacataaagctattggagcaattgtgactcattgtggatgga |
214 |
Q |
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||||| ||| || ||||||||||||||| |||||||||||||||||| |||| |
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| T |
14710151 |
ttgatacttgaaaataaagctattggaggaattgtgactcattgtggttgga |
14710100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 17620164 - 17620215
Alignment:
| Q |
163 |
ttgattcttcaacataaagctattggagcaattgtgactcattgtggatgga |
214 |
Q |
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||||| ||| || ||||||||||||||| |||||||||||||||||| |||| |
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| T |
17620164 |
ttgatacttgaaaataaagctattggaggaattgtgactcattgtggttgga |
17620215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 12613691 - 12613729
Alignment:
| Q |
178 |
aaagctattggagcaattgtgactcattgtggatggaac |
216 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||| |
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| T |
12613691 |
aaagctattggaggaattgtgactcattgtggttggaac |
12613729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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