View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12094_low_2 (Length: 693)
Name: NF12094_low_2
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 16 - 677
Target Start/End: Complemental strand, 32272486 - 32271826
Alignment:
| Q |
16 |
acatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272486 |
acatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
32272387 |
T |
|
| Q |
116 |
attatattattttcatgttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272386 |
attatattattttcatgttcat-aaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
32272288 |
T |
|
| Q |
216 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272287 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
32272188 |
T |
|
| Q |
316 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32272187 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctacg |
32272088 |
T |
|
| Q |
416 |
agccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272087 |
agccaggtcttgaagccgtggtgaaggagtgcaggggaaggaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgt |
32271988 |
T |
|
| Q |
516 |
atctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32271987 |
atctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttct |
32271888 |
T |
|
| Q |
616 |
aaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaattga |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32271887 |
aaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaattga |
32271826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 464 - 677
Target Start/End: Complemental strand, 45416130 - 45415917
Alignment:
| Q |
464 |
tcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagc |
563 |
Q |
| |
|
||||||||||||| | || ||||||||| ||||| |||||| ||||||| ||| ||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
45416130 |
tcttcagcactgatatagaaaaacatgtttatgaagcggatataatctttgttaatgtcaacacaccaacaaaaacaagtggccttggagctggcaaagc |
45416031 |
T |
|
| Q |
564 |
ggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaaca |
663 |
Q |
| |
|
||| |||||||| || ||||| ||| | || | ||||| ||||||||||| | ||| |||||||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
45416030 |
ggcggatttaacttattgggaaagtgcagcgagaatgatagccgatgtttcaagatcaaacaaaattgtcgttgagaaatcaactgttccagttagaaca |
45415931 |
T |
|
| Q |
664 |
gctgaagcaattga |
677 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
45415930 |
gctgaagtaattga |
45415917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 45416311 - 45416267
Alignment:
| Q |
283 |
attggagctggatatgttggtggtcccacaatggctgtgattgcc |
327 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
45416311 |
attggagctggatatgtagggggtccaacaatggctgttattgcc |
45416267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 261 - 677
Target Start/End: Complemental strand, 19327411 - 19326995
Alignment:
| Q |
261 |
aaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtc |
360 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||| | || || |
|
|
| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattgaggtagctgttgtt |
19327312 |
T |
|
| Q |
361 |
gatatttcagcgccgagaatcaacggttggaacagcgaccacctaccgatctatgagccaggtcttgaagccgtggtgaaggagtgcaggggaaggaacc |
460 |
Q |
| |
|
||||| | |||| ||||||| | ||||||||| |||||| | || || |||||||| |||||||| | ||||||||| ||||||| |||| ||||| |
|
|
| T |
19327311 |
gatatcgccacgcctcgaatcaatgcttggaacagtgaccacttgcctatatatgagcctggtcttgatgatgtggtgaagaagtgcagaggaaagaacc |
19327212 |
T |
|
| Q |
461 |
ttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaa |
560 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||| | || || ||||| || |||||||| || || || ||||| ||||||||||| ||||| |
|
|
| T |
19327211 |
ttttcttcagcactgatgttgagaaacatgttgccgaggctaacatcgtgtttgtttcggtgaacactccgaccaagactcagggtcttggagctggcaa |
19327112 |
T |
|
| Q |
561 |
agcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttaga |
660 |
Q |
| |
|
||| |||||| | || |||||||||||| | ||| | |||||||| |||||||| ||||||||||||||||| || || ||||| ||||| || |||| | |
|
|
| T |
19327111 |
agcagctgatctcacttactgggagagtgctgctagaatgattgctgatgtttcaaaatcggacaaaattgtcgtcgagaaatcgactgttccggttaaa |
19327012 |
T |
|
| Q |
661 |
acagctgaagcaattga |
677 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
19327011 |
actgctgaggcaattga |
19326995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 505 - 677
Target Start/End: Complemental strand, 3665034 - 3664862
Alignment:
| Q |
505 |
atagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccggcaaagcggctgatttaacatactgggagagttccgctcggatgattg |
604 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||||| ||||| || ||||||||||| || ||||| || || |||||||| | ||||| ||||||| |
|
|
| T |
3665034 |
atagtgtttgtctctgtgaacaccccgactaaaactcagggtctcggtgccggcaaagcagcagatttgacgtattgggagagcgcagctcgtatgattg |
3664935 |
T |
|
| Q |
605 |
ccgatgtttctaaatcggacaaaattgtggttgaaaaatcaactgtacctgttagaacagctgaagcaattga |
677 |
Q |
| |
|
||||||| || || || |||||||| || || || ||||||||||| ||||| | ||| ||||| |||||||| |
|
|
| T |
3664934 |
ccgatgtctcaaagtctgacaaaatcgttgtcgagaaatcaactgtccctgtcaaaactgctgaggcaattga |
3664862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 3665277 - 3665213
Alignment:
| Q |
262 |
aaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgc |
326 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||| |
|
|
| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgc |
3665213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 632
Target Start/End: Complemental strand, 10779356 - 10779182
Alignment:
| Q |
458 |
accttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaactcatggtcttggagccgg |
557 |
Q |
| |
|
||||||||||||||||||| || || |||||||| |||||| | || || ||||||| ||| |||| | || |||||||| |||||||||| | |
|
|
| T |
10779356 |
accttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaacatgctgactaaaactcacagtcttggagctgt |
10779257 |
T |
|
| Q |
558 |
caaagcggctgatttaacatactgggagagttccgctcggatgattgccgatgtttctaaatcggacaaaattgt |
632 |
Q |
| |
|
|| ||| || ||||||||||| || |||||| | ||| ||||||| ||| ||||||||||||| || |||||||| |
|
|
| T |
10779256 |
cacagccgcagatttaacatattgcgagagtgcggcttggatgatcgccaatgtttctaaatctgaaaaaattgt |
10779182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 540
Target Start/End: Complemental strand, 4835726 - 4835643
Alignment:
| Q |
456 |
gaaccttttcttcagcactgaagtggagaaacatgttgcagaagctgatatagtctttgtatctgtgaacacaccaacaaaaact |
540 |
Q |
| |
|
||||||||||||||||| ||| || | ||||||||| | | ||||| ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
4835726 |
gaaccttttcttcagcattgatgtcaaaaaacatgttataca-gctgacatagtgtttgtatctgtcaatacaccaacaaaaact |
4835643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University