View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12094_low_4 (Length: 463)

Name: NF12094_low_4
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12094_low_4
NF12094_low_4
[»] chr4 (2 HSPs)
chr4 (50-446)||(41231678-41232077)
chr4 (344-396)||(13771765-13771817)
[»] chr6 (1 HSPs)
chr6 (294-394)||(1474103-1474203)
[»] chr8 (5 HSPs)
chr8 (326-396)||(13422042-13422112)
chr8 (357-394)||(4892225-4892262)
chr8 (319-396)||(25485402-25485479)
chr8 (319-396)||(29459234-29459311)
chr8 (343-396)||(44746815-44746868)
[»] chr5 (1 HSPs)
chr5 (311-396)||(6180971-6181051)
[»] chr2 (3 HSPs)
chr2 (319-396)||(34173067-34173144)
chr2 (344-396)||(13873362-13873414)
chr2 (344-396)||(14013487-14013539)
[»] chr1 (5 HSPs)
chr1 (319-396)||(29510454-29510531)
chr1 (319-396)||(46682696-46682773)
chr1 (344-396)||(794723-794775)
chr1 (344-396)||(45195214-45195266)
chr1 (319-367)||(47216078-47216126)
[»] chr3 (1 HSPs)
chr3 (319-371)||(1364052-1364104)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 50 - 446
Target Start/End: Complemental strand, 41232077 - 41231678
Alignment:
Q  50 caagaataacaatcaaaggtatacaattggctttatgagatgggaagctaagatatgggatggggtcatatttatagtacacaggccatgcttagaagta 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
T  41232077 caagaataacaatcaaaggtatacaattggctttatgagatgggaagctaagatatgggatggggtcatatttatagtacacaggccatgcttggaag-- 41231980  T
Q  150 catacatgtaggagtctactttttctcccatttgggactattatattcgacaacaattttcaactatagcctggatggttaataagtttaaatatgttgt 249  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41231979 -----------gagtctactttttctcccatttgggactattatattcgacaacaattttcaactatagcctggatggttaataagtttaaatatgttgt 41231891  T
Q  250 ttatttggtctagtcgatggttgattttcaactcattaaccg---------aagagtaaattacag-------tcttctcttgagagatgtttaaattac 333  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||        |||||||||||||||||||||||||||    
T  41231890 ttatttggtctagtcgatggttgattttcaactcattaaccacatactttcaagagtaaattacacagtcttctcttctcttgagagatgtttaaattac 41231791  T
Q  334 actaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattagaggggtgttagtataggaccttttttggatgtggctca 433  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41231790 actaccttatcctcttgtgtcaaaatatacactccccaactcttttatgcaaaacatattagaggggtgttagtataggaccttttttggatgtggctca 41231691  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 13771765 - 13771817
Alignment:
Q  344 cctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  13771765 cctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 13771817  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 1474103 - 1474203
Alignment:
Q  294 gagtaaattacagtcttctcttgagagatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatatt 393  Q
    |||||||||| | || || ||||||| ||| ||||||||||| ||| |  |||||||||||||||||||||||| |||   || ||| ||||||||||||    
T  1474103 gagtaaattagactcctcacttgagaaatggttaaattacaccaccctcacctcttgtgtcaaaatatacactctcctcccctcttaagcaaaacatatt 1474202  T
Q  394 a 394  Q
    |    
T  1474203 a 1474203  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 13422112 - 13422042
Alignment:
Q  326 taaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    ||||||||||| || |  |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  13422112 taaattacactcccctcccctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 13422042  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 4892262 - 4892225
Alignment:
Q  357 aatatacactcccctattcttttatgcaaaacatatta 394  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  4892262 aatatacaatcccctattcttttatgtaaaacatatta 4892225  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 25485479 - 25485402
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||||| ||||||||| || |  ||||||  || ||||||||||||||||||  || |||| ||||||||||||||    
T  25485479 agatgtttgaattacactcccctcccctcttaagttaaaatatacactcccctaccctcttattcaaaacatattaga 25485402  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 29459311 - 29459234
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    ||||| || ||||||||| || | ||||||| ||| ||||||| |||||||||  ||| |||| ||||||||||||||    
T  29459311 agatgcttgaattacactcccctctcctcttatgttaaaatatccactcccctcatctcttattcaaaacatattaga 29459234  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 44746868 - 44746815
Alignment:
Q  343 tcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    ||||||| ||| ||||||||||||||||| | || |||| ||||||||||||||    
T  44746868 tcctcttatgttaaaatatacactcccctctcctcttattcaaaacatattaga 44746815  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 6181051 - 6180971
Alignment:
Q  311 ctcttgagagatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    ||||||| ||||||||||||||||||  ||||||| ||| ||| |||||| | ||||||     || |||||||||||||||||||    
T  6181051 ctcttgaaagatgtttaaattacactcgcttatccgcttatgttaaaatacatactccc-----ctcttatgcaaaacatattaga 6180971  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 34173067 - 34173144
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    ||||| || |||||||||||| |  |||||| ||| |||||||||||||||||   || |||| ||||||||||||||    
T  34173067 agatgcttgaattacactaccctcccctcttatgttaaaatatacactcccctcccctcttattcaaaacatattaga 34173144  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 13873362 - 13873414
Alignment:
Q  344 cctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  13873362 cctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 13873414  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 14013487 - 14013539
Alignment:
Q  344 cctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  14013487 cctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 14013539  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 29510531 - 29510454
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||||| ||||||||| || |  |||||| ||| |||||||||||||||||   || |||| ||||||||||||||    
T  29510531 agatgtttgaattacactccccttccctcttatgttaaaatatacactcccctcccctcttattcaaaacatattaga 29510454  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 396
Target Start/End: Original strand, 46682696 - 46682773
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||||| ||||||||| |  | ||||||| ||| |||||||||||||||||  ||| |||| ||||| ||||||||    
T  46682696 agatgtttgaattacacttcgctctcctcttatgttaaaatatacactccccttctctcttattcaaaatatattaga 46682773  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 794775 - 794723
Alignment:
Q  344 cctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  794775 cctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 794723  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 45195266 - 45195214
Alignment:
Q  344 cctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 396  Q
    |||||| ||| |||||||||||||||||   ||||||| ||||||||||||||    
T  45195266 cctcttatgttaaaatatacactcccctccccttttattcaaaacatattaga 45195214  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 47216078 - 47216126
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactc 367  Q
    |||||||| ||||||||| || ||||||||| ||| |||||||||||||    
T  47216078 agatgtttgaattacacttccctatcctcttatgttaaaatatacactc 47216126  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 1364104 - 1364052
Alignment:
Q  319 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccct 371  Q
    |||||||| ||||||||| || | ||||||| ||| |||||||||||||||||    
T  1364104 agatgtttgaattacactcccatctcctcttatgttaaaatatacactcccct 1364052  T

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