View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_low_5 (Length: 456)
Name: NF12094_low_5
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 54449078 - 54448651
Alignment:
| Q |
18 |
aatccgatatccaagtttatgcaactttgcacaaaaccaaatcaagtgttacttttcaaaattacacaatagtagaaattatgatggaaattcgagctcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449078 |
aatccgatatccaagtttatgcaactttgcacaaaaccaaatcaagtgttacttttcaaaattacacaatagtagaaattatgatggaaattcgagctcc |
54448979 |
T |
|
| Q |
118 |
aaagatggtggcttgtcacactgtgccttatccttatgctgttttttattgtcatagtcaagaaagtgagaatagggtgtataaagttttattggggggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54448978 |
aaagatggtggcttgtcacactgtgccttatccttatgctgttttttattgtcatagtcaagaaagtgagaatagggtgtataaagttttattggggggt |
54448879 |
T |
|
| Q |
218 |
gagaatggagataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctaatcatgtttcatttcaagttcttggtgttacaccag |
317 |
Q |
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| T |
54448878 |
gagaatggagataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctagtcatgtttcatttcaagttcttggtgttacaccag |
54448779 |
T |
|
| Q |
318 |
gaagctcttctgtgtgtcattttttcccagcggacaattacatttgggtccctaaagtgaaatcacaaggttcttctagcatgtgatttcttgtagtagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54448778 |
gaagctcttctgtgtgtcattttttcccagcggacaattacatttgggtccctaaagtgaaatcacaaggttcttctagcatgtgatttcttgtagtagt |
54448679 |
T |
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| Q |
418 |
atagtactagtgtgctttgtcatctgtg |
445 |
Q |
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| T |
54448678 |
atagtactagtgtgctttgtcatttgtg |
54448651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 26 - 407
Target Start/End: Original strand, 49755204 - 49755585
Alignment:
| Q |
26 |
atccaagtttatgcaactttgcacaaaaccaaatcaagtgttacttttcaaaattacacaatagtagaaattatgatggaaattcgagctccaaagatgg |
125 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||| | |||||||| || |||||||||||| | | |||||||| |||||| || |||| |
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| T |
49755204 |
atccaaggttatgcaactttgcacaaaaccaagtcaagtgttactctccaaaattatactatagtagaaattctaaaggaaattctagctcccaaaatgg |
49755303 |
T |
|
| Q |
126 |
tggcttgtcacactgtgccttatccttatgctgttttttattgtcatagtcaagaaagtgagaatagggtgtataaagttttattggggggtgagaatgg |
225 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||| || || ||||| ||||||||||| |
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| T |
49755304 |
tggcttgtcacactgtgccttacccttatgctgttttttattgtcatggccaagaaagtgataatagggtgtatagagcttcattggttggtgagaatgg |
49755403 |
T |
|
| Q |
226 |
agataaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctaatcatgtttcatttcaagttcttggtgttacaccaggaagctct |
325 |
Q |
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||||||||| || || |||| ||||||||| | |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
49755404 |
agataaggtggaagctatggcggtttgtcatatggatacatcacaatgggcaccaagtcatgtttcatttcaagttcttgaggttacaccaggaacctct |
49755503 |
T |
|
| Q |
326 |
tctgtgtgtcattttttcccagcggacaattacatttgggtccctaaagtgaaatcacaaggttcttctagcatgtgatttc |
407 |
Q |
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||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
49755504 |
tctgtgtgtcactttttcccagcggataattacatctgggtccctaaattgaaatcacaaggttcttctaggatgtgatttc |
49755585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 26208478 - 26208758
Alignment:
| Q |
30 |
aagtttatgcaactttgcacaaaaccaaatcaagtgttacttttcaaaattacacaatagtagaaattatgatggaaattcgagctccaaagatggtggc |
129 |
Q |
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||||||||||||||| || ||||||||||||||| |||||||| || || || ||| |||||| || ||| ||| |||||||||||||||||| |
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| T |
26208478 |
aagtttatgcaacttcacatttaaccaaatcaagtgtcacttttcagaactatactatattagaaaaaattatgaggatttcagctccaaagatggtggc |
26208577 |
T |
|
| Q |
130 |
ttgtcacactgtgccttatccttatgctgttttttattgtcatagtcaagaaagtgagaatagggtgtataaagttttattggggggtgagaatggagat |
229 |
Q |
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||||||||| ||||||| ||||||||||| || ||||| ||||| ||||||||||| |||||| | |||| ||||| | | | ||||| ||||| ||| |
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| T |
26208578 |
atgtcacactatgccttacccttatgctgtattctattgccatagccaagaaagtgaaaataggatatatagagtttcacttgtcggtgataatggggat |
26208677 |
T |
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| Q |
230 |
aaggttgaggccatggtggtttgtcacttagatacatcacaatgggcacctaatcatgtttcatttcaagttcttggtgtt |
310 |
Q |
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| ||| || || ||||| |||||||| | ||||| || || |||| || | ||||||||||||||| |||||||||||| |
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| T |
26208678 |
atggtggaagctatggttgtttgtcatatggatacttctcattggggacatggtcatgtttcatttcaggttcttggtgtt |
26208758 |
T |
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