View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12094_low_6 (Length: 442)
Name: NF12094_low_6
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_low_6 |
 | |
|
| [»] scaffold0136 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 2 - 429
Target Start/End: Original strand, 50749974 - 50750407
Alignment:
| Q |
2 |
ataatgttattgaacatataaccttaatgacaaagaaaacactgaaaacaacaatgttcttgcaagagttaccataaaaaactctacataattaaaaaa- |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50749974 |
ataatgttattgaacatataaccttaatgacaaagaaaacactgaaaacaacaattttcttgcaagagttaccataaaaaactctacataataaaaaaaa |
50750073 |
T |
|
| Q |
101 |
gaaactcagatctagagcagatgttgtgtacactgc-----ttacatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcagg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50750074 |
gaaactcagatctagagcagatgttgtgtacactgcactgcttccatttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcagg |
50750173 |
T |
|
| Q |
196 |
cacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgccttactatacactgaaggatgt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50750174 |
cacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctctttttcacttattgccttactatacactgaaggatgt |
50750273 |
T |
|
| Q |
296 |
ccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50750274 |
ccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaa |
50750373 |
T |
|
| Q |
396 |
catgtaagtggctgaaatattttacaggttgcct |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50750374 |
catgtaagtggctgaaatattttacaggttgcct |
50750407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 371
Target Start/End: Original strand, 19411830 - 19412020
Alignment:
| Q |
175 |
catctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgcc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || | | |||||||| | |||| || ||||| |
|
|
| T |
19411830 |
catctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatcagaggaatggcccattctttgtttct------catcttggctggttgcc |
19411923 |
T |
|
| Q |
275 |
ttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactcctt |
371 |
Q |
| |
|
|| |||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || ||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
19411924 |
ttcctatacactgaaggatgtccatctctgcgtaaggcagtcattgtcgtaatatcttgcaggtataccggaaacctcattttcttcagcactcctt |
19412020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 32574991 - 32575063
Alignment:
| Q |
2 |
ataatgttattgaacatataaccttaatgacaaagaaaacactgaaaacaacaatgttcttgcaagagttacc |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32574991 |
ataatgttattgaacatataaccttaatgacaaagaaaacactcaaaacaacaatgttcttgcaagagttacc |
32575063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 4075257 - 4075304
Alignment:
| Q |
178 |
ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4075257 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
4075304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 4423 - 4469
Alignment:
| Q |
176 |
atctcattccaaatatcaggcacaccagggaggcaccaatggctgca |
222 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
4423 |
atctcattccatgtatcaggaacgccagggaggcaccaatggctgca |
4469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 39085650 - 39085604
Alignment:
| Q |
179 |
tcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
225 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
39085650 |
tcattccacatatcaggcactccaggtagacaccaatggctgcaatc |
39085604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
181 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatca |
226 |
Q |
| |
|
||||||| ||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 18358875 - 18358919
Alignment:
| Q |
181 |
attccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
225 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18358875 |
attccaagtatcaggaacaccagctaggcaccaatggctgcaatc |
18358919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University