View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12094_low_7 (Length: 437)

Name: NF12094_low_7
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12094_low_7
NF12094_low_7
[»] chr1 (12 HSPs)
chr1 (10-424)||(45692787-45693204)
chr1 (85-332)||(24233411-24233652)
chr1 (120-421)||(25610872-25611164)
chr1 (132-332)||(24242849-24243043)
chr1 (273-347)||(24629188-24629262)
chr1 (272-347)||(24634782-24634857)
chr1 (271-345)||(23896116-23896190)
chr1 (271-325)||(25478863-25478917)
chr1 (272-325)||(24246496-24246549)
chr1 (272-347)||(24513055-24513130)
chr1 (273-401)||(24626689-24626823)
chr1 (133-172)||(25478731-25478770)
[»] chr7 (2 HSPs)
chr7 (133-412)||(1421081-1421360)
chr7 (72-111)||(1421391-1421430)
[»] chr4 (1 HSPs)
chr4 (273-347)||(11032910-11032984)
[»] scaffold0015 (2 HSPs)
scaffold0015 (271-348)||(32305-32382)
scaffold0015 (84-348)||(40357-40624)
[»] chr5 (5 HSPs)
chr5 (272-325)||(3181716-3181769)
chr5 (272-323)||(11081812-11081863)
chr5 (272-323)||(23766863-23766914)
chr5 (272-323)||(23816711-23816762)
chr5 (273-322)||(20292995-20293044)
[»] chr3 (15 HSPs)
chr3 (272-323)||(2696733-2696784)
chr3 (272-323)||(4142135-4142186)
chr3 (272-323)||(4157945-4157996)
chr3 (271-323)||(3754598-3754650)
chr3 (273-323)||(7324432-7324482)
chr3 (273-322)||(13498224-13498273)
chr3 (273-323)||(1437996-1438045)
chr3 (273-323)||(2456249-2456299)
chr3 (275-313)||(2459277-2459315)
chr3 (273-323)||(7334240-7334290)
chr3 (273-323)||(7942485-7942535)
chr3 (272-313)||(803229-803270)
chr3 (274-323)||(2631358-2631407)
chr3 (273-313)||(956381-956421)
chr3 (273-313)||(43991960-43992000)
[»] chr2 (1 HSPs)
chr2 (273-323)||(36577366-36577416)
[»] scaffold0044 (1 HSPs)
scaffold0044 (271-323)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Complemental strand, 45693204 - 45692787
Alignment:
Q  10 gcacagactcttggagtaggattaaggacttccctgctatgactccttattatggtcacctgggaatattcataagtggcacagttaattggttgacata 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45693204 gcacagactcttggagtaggattaaggacctccctgctatgactccttattatggtcacatgggaatattcataagtggcacagttaattggttgacata 45693105  T
Q  110 ttacgattcaaatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcctgattatggaaattttgatatgttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45693104 ttacgattcaaatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcctgattatggaaattttgatatgttg 45693005  T
Q  210 accttgggtgtaatgagggaatgcttgtgcatattttctagagaaagttctcattcttctcttgatgtttggcttatgaaggaatacggaaata---aag 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   | |    
T  45693004 accttgggtgtaatgagggaatgcttgtgcatattttctagaaaaagttctcattcttctcttgatgtttggcttatgaaggaatacggatataaggagg 45692905  T
Q  307 agtcttgtattaaattgatttgtctttcttactttggtgattctggatacttttttacaaagatattatatatttcggaggaagacaagcatgtgctgtt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |    
T  45692904 agtcttgtattaaattgatttgtctttcttactttggtgattctggttacttttttacaaagatattatatacttcggaggacgacaagcatgtgctgct 45692805  T
Q  407 tgtcttcaaagagaaaga 424  Q
    ||||||||||||||||||    
T  45692804 tgtcttcaaagagaaaga 45692787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 85 - 332
Target Start/End: Complemental strand, 24233652 - 24233411
Alignment:
Q  85 gtggcacagttaattggttgacatattacgattcaaatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcc 184  Q
    |||||||||| ||||||||||| |||||  | |||| |||||||  |  |||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  24233652 gtggcacagtgaattggttgacttattataactcaagtgacttgggtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcc 24233553  T
Q  185 tgattatggaaattttgatatgttgaccttgggtgtaatgagggaatgcttgtgcatattttctagagaaagttctcattcttctcttgatgtttggctt 284  Q
    ||||| |||| |||||  | ||| ||| |||| | | |||||||| |||||||||||||||||| || ||||  |  |||||| |  |||||||||||||    
T  24233552 tgattctggagatttttttttgtcgactttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttactgatgtttggctt 24233453  T
Q  285 atgaaggaatacggaaataaagagtcttgtattaaattgatttgtctt 332  Q
          ||||||||||||||||| ||||| |||||||||||| |||||    
T  24233452 ------gaatacggaaataaagaatcttggattaaattgattagtctt 24233411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 25611164 - 25610872
Alignment:
Q  120 aatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcctgattatggaaattttgatatgttgaccttgggtg 219  Q
    |||| ||||| | ||||||||||||||||||| ||||| ||||||||| |||||||  ||   |||||| |||| |||||||| |  |||| ||||||||    
T  25611164 aatggcttgtatgccattgtttctcttcatttagggaaagaatcttatgaagaaatttcgcatcctgatcatgggaattttgagaaattgaacttgggtg 25611065  T
Q  220 taatgagggaatgcttgtgcatattttctagagaaagttctcattcttctcttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaa 319  Q
    | ||||| || || |||||||||||||||        ||||||  | | |  |||||||||||| |||| |||||||||||||||||| |||||  ||||    
T  25611064 tgatgagagattgtttgtgcatattttctta------ttctcacccattttatgatgtttggctaatgacggaatacggaaataaagaatcttgggttaa 25610971  T
Q  320 attgatttgtctttcttactttggtgattctggatacttttttacaaagatattatatatttcggaggaagacaagcatgtgctgtttgtcttcaaagag 419  Q
    |||||||  |||| ||||||||||||    ||| ||| ||||||| ||||||||||||||||  ||||| |||||  ||||| || | ||||||| ||||    
T  25610970 attgattcatcttccttactttggtg---gtggttacctttttaccaagatattatatatttatgaggacgacaacgatgtgttgctcgtcttcagagag 25610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 332
Target Start/End: Complemental strand, 24243043 - 24242849
Alignment:
Q  132 accattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcctgattatggaaattttgatatgttgaccttgggtgtaatgagggaat 231  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||  |   ||||||||||||| |||||| || ||||||| ||||||| ||| |||| |    
T  24243043 accattgtttctcttgatttggggaaagaatcttaccaagatatttcacagcctgattatggagattttgttaggttgaccatgggtgtgatgcgggatt 24242944  T
Q  232 gcttgtgcatattttctagagaaagttctcattcttctcttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtct 331  Q
     ||||||| ||||||||        |||| | |||| |  |||||||||||||||||||  ||||||||||||||||||||| |||||||| ||| ||||    
T  24242943 tcttgtgcctattttct------tattctgactcttttactgatgtttggcttatgaagatatacggaaataaagagtcttggattaaattaattcgtct 24242850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 24629262 - 24629188
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgat 347  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||   |||| ||||||||||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattcatccatcttccttactttggtgat 24629188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 24634857 - 24634782
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgat 347  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||| ||||||| || ||| ||||||||||||||    
T  24634857 tgatgtttggcttatgaaggaatacggaattaaagagtcttagattgaattgatctgccttccttactttggtgat 24634782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 23896190 - 23896116
Alignment:
Q  271 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtg 345  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||  | || ||||||||||||    
T  23896190 ttgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaatttattcatgttccttactttggtg 23896116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 25478863 - 25478917
Alignment:
Q  271 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgat 325  Q
    |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  25478863 ttgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattgat 25478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 24246549 - 24246496
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgat 325  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  24246549 tgatgtttggcttatgaaagaatacggaaataaagagtcttggatgaaattgat 24246496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 24513055 - 24513130
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgat 347  Q
    |||||||||||||||||| ||||| |||| ||||||||| || |||||||||||   |||| ||||||||||||||    
T  24513055 tgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattgatccatcttccttactttggtgat 24513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 401
Target Start/End: Complemental strand, 24626823 - 24626689
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattga------tttgtctttcttactttggtgattctggatacttttttacaa 366  Q
    |||||||||||||||||||||||| ||| ||||||||||||  |||||||||      || ||||| ||  ||||||||||||| | ||||||||  | |    
T  24626823 gatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgattcgttttcgtcttcctgcctttggtgattctagttactttttgccca 24626724  T
Q  367 agatattatatatttcggaggaagacaagcatgtg 401  Q
    ||||| ||||| |||| ||||| ||||| ||||||    
T  24626723 agatagtatatgtttctgaggacgacaaccatgtg 24626689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 25478731 - 25478770
Alignment:
Q  133 ccattgtttctcttcatttggggaaggaatcttatcaaga 172  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  25478731 ccattgtttctcttcatttggggaaagagtcttatcaaga 25478770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 133 - 412
Target Start/End: Complemental strand, 1421360 - 1421081
Alignment:
Q  133 ccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcctgattatggaaattttgatatgttgaccttgggtgtaatgagggaatg 232  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| |  ||| ||| ||||||||||| |||||||| ||    
T  1421360 ccattgtttctcttcatttggggaaggaatcttatcaagagataccgcaacctcattatggaaatctgaataagttaaccttgggtgtgatgagggattg 1421261  T
Q  233 cttgtgcatattttctagagaaagttctcattcttctcttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctt 332  Q
    ||||||||| |||||| ||||||||   || ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  1421260 cttgtgcattttttctcgagaaagtcaccactcttctactgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattgattcatctt 1421161  T
Q  333 tcttactttggtgattctggatacttttttacaaagatattatatatttcggaggaagacaagcatgtgctgtttgtctt 412  Q
     ||||||||||||||| ||| |    || ||| | |||| |||||||||||||||| ||||| | ||||||| |||||||    
T  1421160 ccttactttggtgattttggttttgcttataccaggatagtatatatttcggaggacgacaaccgtgtgctgcttgtctt 1421081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 1421430 - 1421391
Alignment:
Q  72 ggaatattcataagtggcacagttaattggttgacatatt 111  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  1421430 ggaatattcgtaagtggcacggttaattggttgacatatt 1421391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 11032910 - 11032984
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgat 347  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||   |||| ||||||||||||||    
T  11032910 gatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattgatccatcttccttactttggtgat 11032984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 32382 - 32305
Alignment:
Q  271 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgatt 348  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||| ||||| |||||    
T  32382 ttgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttccttcctttgctgatt 32305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 348
Target Start/End: Complemental strand, 40624 - 40357
Alignment:
Q  84 agtggcacagttaattggttgacatattacgattcaaat---gacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgt 180  Q
    ||||||||||||||||||| ||||||||   |||||| |   ||||| | |  |||||||||||| |||||| | |||||||||||  | ||||||| |     
T  40624 agtggcacagttaattggtagacatattgtaattcaactcgtgacttatgtgtcattgtttctctacatttgcgaaaggaatcttacgaggaaatactgc 40525  T
Q  181 tgcctgattatggaaattttgatatgttgaccttgggtgtaatgagggaatgcttgtgcatattttctagagaaagttctcattcttctcttgatgtttg 280  Q
      || |||| ||||||| || |||| |  || |||| | |  ||||||| ||||||||||||||||||  | ||||     | |||| |  |||||||||    
T  40524 atccagattctggaaatattaatatctcaactttggatatcttgagggattgcttgtgcatattttctcaaaaaagaaacgactcttttactgatgtttg 40425  T
Q  281 gcttatgaaggaatacggaaataaagagtcttgtattaaattgatttgtctttcttactttggtgatt 348  Q
    ||||||||||||||| | ||||||||| ||||| |||||||||||| ||||| ||| ||||| |||||    
T  40424 gcttatgaaggaatatgaaaataaagactcttggattaaattgattcgtcttccttcctttgctgatt 40357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 3181716 - 3181769
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattgat 325  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  3181716 tgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||| |||||||||| || ||||||||||||||||| | |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||| ||||||| ||||| ||||||||||||||||| | |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||| ||||||| ||||| ||||||||||||||||| | |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaatt 322  Q
    ||||||||| ||||||||||||| |||| |||||||||||| | ||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 3754598 - 3754650
Alignment:
Q  271 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 7324482 - 7324432
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| |||||||||| |||||||||||||||||||| | |||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattg 7324432  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaatt 322  Q
    ||||||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| |||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| | |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 2459277 - 2459315
Alignment:
Q  275 tgtttggcttatgaaggaatacggaaataaagagtcttg 313  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttg 2459315  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 7334290 - 7334240
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| | |||||||| |||||||||||||||||||| | |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattg 7334240  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| |||||||||| || || |||||||||||||| |||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 803270 - 803229
Alignment:
Q  272 tgatgtttggcttatgaaggaatacggaaataaagagtcttg 313  Q
    |||||||||| ||||||| ||||| |||||||||||||||||    
T  803270 tgatgtttgggttatgaaagaatatggaaataaagagtcttg 803229  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  274 atgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    |||||||| ||||||||||||| |||||| |||||||||| | |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 956381 - 956421
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttg 313  Q
    ||||||||| ||||||||||||| ||||| |||||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttg 956421  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 43991960 - 43992000
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttg 313  Q
    ||||||||| ||||||||||||| ||||||| |||||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttg 43992000  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  273 gatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 89141 - 89193
Alignment:
Q  271 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgtattaaattg 323  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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