View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12094_low_9 (Length: 324)
Name: NF12094_low_9
Description: NF12094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12094_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 3304604 - 3304897
Alignment:
| Q |
16 |
tgaaaattttcttgttgcgcaagaacaatgaacaaatgatccgtacatattgtactaaaagtcttattgaatgtgaaataggggttgtgcatatgaaatt |
115 |
Q |
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| T |
3304604 |
tgaaaattttcttgttgcgcaagaacaatgaacaaatgatccgtacatattgtactaaaagtctgattgaatgtgaaataggggttgtgcatatgaaatt |
3304703 |
T |
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| Q |
116 |
aatggctttttgtgatgaattgcaggtattggtagctcttcaagcggcactaactgttataggtaatttcacaatgtgcatagccgcataccggatatac |
215 |
Q |
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| T |
3304704 |
aatggctttttgtgatgaattgcaggtattggtagctcttcaagcggcactaactgttataggtaatttcacaatgtgcctagccgcataccggatatac |
3304803 |
T |
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| Q |
216 |
aaatcatcccgcgaaagctctgagaatatttgaagtgtttgattacaagtatctcgacgtagcatctacgcttgaatgaaagtcctaatctttt |
309 |
Q |
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| T |
3304804 |
aaatcatcccgcgaaagctctgagaatatttgaagtgtttgattacaagtatctcgacgtagcatctacgcttgaatgaaagtcctaatctttt |
3304897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 3292973 - 3293225
Alignment:
| Q |
55 |
tccgtacatattgtactaaaagtcttattgaatgtgaaataggggttgtgcatatgaaattaatggctttttgtgatgaattgcaggtattggtagctct |
154 |
Q |
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| T |
3292973 |
tccgtacatattgtactaaaaatctgattgaatgtgaaataggggttgtacatatgaaattaatggctcattgtaatgagatgcaggtattggtagctct |
3293072 |
T |
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| Q |
155 |
tcaagcggcactaactgttataggtaatttcacaatgtgcatagccgcataccggatatacaaatcatcccgcgaaagctctgagaatatttgaagtgtt |
254 |
Q |
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| T |
3293073 |
tcaagcggcactaactgttataggtaatttcacaatgtgtatagctgcataccggatatacaaatcatcccgcgaaagctctgagaacatttgaagtgtt |
3293172 |
T |
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| Q |
255 |
tgattacaagtatctcgacgtagcatctacgcttgaatgaaagtcctaatctt |
307 |
Q |
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| T |
3293173 |
tgattacaagtatctcgaagtagcatttacgctcgaatggaagtcctaatctt |
3293225 |
T |
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