View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12095_high_12 (Length: 380)

Name: NF12095_high_12
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12095_high_12
NF12095_high_12
[»] chr7 (8 HSPs)
chr7 (5-380)||(39457932-39458307)
chr7 (9-233)||(39437114-39437335)
chr7 (8-233)||(39424091-39424313)
chr7 (9-233)||(39463466-39463687)
chr7 (264-337)||(39423980-39424049)
chr7 (264-337)||(39437000-39437069)
chr7 (76-183)||(47369008-47369115)
chr7 (58-139)||(19981470-19981551)
[»] chr4 (1 HSPs)
chr4 (54-175)||(38490494-38490615)
[»] chr1 (1 HSPs)
chr1 (41-175)||(43098352-43098486)
[»] chr3 (5 HSPs)
chr3 (100-175)||(48445119-48445194)
chr3 (60-130)||(7176148-7176218)
chr3 (51-175)||(13465547-13465671)
chr3 (59-175)||(27816246-27816362)
chr3 (51-165)||(14350675-14350789)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 39457932 - 39458307
Alignment:
Q  5 atcaagaaagagatcggaagtttcgatgcctccggagtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457932 atcaagaaagagatcggaagtttcgatgcctccggagtcaaagtcgagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtg 39458031  T
Q  105 gttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtctaccggcagtgaagattttttcatcc 204  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458032 gttacaacaagtttggttggaagaaaataaagtatttcaaagagaattgaatccggcaagtcgctaattctgtctaccggcagtgaagattttttcatcc 39458131  T
Q  205 ttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcatacgatacatctattatttatatcgatctaaacctaaaatatatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458132 ttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcatacgatacatctattatttatatcgatctaaacctaaaatatatt 39458231  T
Q  305 ttgagccaaaatctagtatattttgtttaataaaacatacaagggttcttttaataaaaaggaatcaataaaacac 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  39458232 ttgagccaaaatctagtatattttgtttaataaaacatacaagggttcttttaaaaaaaaggaataaataaaacac 39458307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 39437335 - 39437114
Alignment:
Q  9 agaaagagatcggaagtttcgatgcctccggagtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggtta 108  Q
    ||||||||||| ||||||| || ||| |  | ||||||||| || | ||||||||| |||||||   |||||||||||||||||||||| |||||||||     
T  39437335 agaaagagatcagaagttttgaagccgctagggtcaaagtcgagggagagaactgatagccacaatcgtttccatctctttgagaggacacttgtggttg 39437236  T
Q  109 cagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtctaccggcagtgaagattttttcatccttct 208  Q
    ||||||||||||||||||||||||| ||||| ||| | |||||||||||||| | ||||||||| || |||||   |   ||||||||| ||| ||||||    
T  39437235 cagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggtaggtcgctaatcctatctac---cttggaagattttctcaaccttct 39437139  T
Q  209 ctttttaagagagggagacgacatc 233  Q
    ||||||| | |||| ||||||||||    
T  39437138 ctttttatgtgaggaagacgacatc 39437114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 39424313 - 39424091
Alignment:
Q  8 aagaaagagatcggaagtttcgatgcctccggagtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggtt 107  Q
    |||||||||||| ||||||| || ||  | |||||||||||| | ||| ||||| || |||||||   |||||||||| ||||||||||| |||||||||    
T  39424313 aagaaagagatcagaagttttgaagcggctggagtcaaagtcgaaagctagaaccgaaagccacaatagtttccatctttttgagaggacacttgtggtt 39424214  T
Q  108 acagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtctaccggcagtgaagattttttcatccttc 207  Q
     ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| |||||| || || |||||   |   ||||||||| ||| |||||    
T  39424213 gcagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggcaggtcgcttatcctatctac---cttggaagattttctcaaccttc 39424117  T
Q  208 tctttttaagagagggagacgacatc 233  Q
    |||||||| | |||| ||||||||||    
T  39424116 tctttttatgtgaggaagacgacatc 39424091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 39463466 - 39463687
Alignment:
Q  9 agaaagagatcggaagtttcgatgcctccggagtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggtta 108  Q
    |||||||| ||  |||||| || ||| | |||||||||||| ||||  ||||| ||||||||||   ||||||||||||||||||| |||||||| |||     
T  39463466 agaaagaggtcaaaagttttgaagccgctggagtcaaagtcgagagaaagaacggagagccacaatcgtttccatctctttgagagaacgcttgtcgttg 39463565  T
Q  109 cagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtctaccggcagtgaagattttttcatccttct 208  Q
    ||||||||||||||||||||||||| ||||| ||   ||||||||| ||||||||||||||||| || |||||   |   ||||||||| ||| ||||||    
T  39463566 cagcaagtttggttggaagaaaatagagtatgtggctgagaattgagtccggcaagtcgctaatcctatctac---cttggaagattttctcaaccttct 39463662  T
Q  209 ctttttaagagagggagacgacatc 233  Q
    ||||||| | |||| | ||||||||    
T  39463663 ctttttatgtgaggaatacgacatc 39463687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 39424049 - 39423980
Alignment:
Q  264 atacatctattatttatatcgatctaaacctaaaatatattttgagccaaaatctagtatattttgtttaataa 337  Q
    |||||||||||||||||| |    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  39424049 atacatctattatttatagc----taaacctaaaatatattttcagctaaaatctcgtatattttgtttaataa 39423980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 39437069 - 39437000
Alignment:
Q  264 atacatctattatttatatcgatctaaacctaaaatatattttgagccaaaatctagtatattttgtttaataa 337  Q
    |||| ||||||||||||    |||||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  39437069 atacgtctattatttat----atctaaacctaaaatatattttgagctaaaatctagtaaattttgttcaataa 39437000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 47369008 - 47369115
Alignment:
Q  76 gtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct 175  Q
    ||||||||||||||||||| |||||||||||| |||| | |||||||||  ||||  | || || ||| |||| || ||||| |||| |||||| |||||    
T  47369008 gtttccatctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcatgtcgctgattct 47369107  T
Q  176 gtctaccg 183  Q
     |||||||    
T  47369108 atctaccg 47369115  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 19981470 - 19981551
Alignment:
Q  58 gaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtat 139  Q
    ||||||||||||| |   ||||||||||||||||||||||||||| | |  |||| ||||||||||| |||||  |||||||    
T  19981470 gaactgagagccataatggtttccatctctttgagaggacgcttgggatcgcagcgagtttggttgggagaaatgaaagtat 19981551  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 38490494 - 38490615
Alignment:
Q  54 gcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattg 153  Q
    ||||| ||||||||||||||   |||||||||||||||||||| ||||||| | | |||||| |||||||| |||||| | || || ||| |||| || |    
T  38490494 gcgaggactgagagccacaccgatttccatctctttgagaggaagcttgtgatgaaagcaagattggttgggagaaaagagagaatgtgacagagtatcg 38490593  T
Q  154 aatccggcaagtcgctaattct 175  Q
    |||| |||||||||||||||||    
T  38490594 aatcaggcaagtcgctaattct 38490615  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 43098486 - 43098352
Alignment:
Q  41 gtcaaagtcaagagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatt 140  Q
    ||||||||  ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| || | |||||||||||||| |  ||| | || ||     
T  43098486 gtcaaagtagagagcaagaactgagagccatacctgttcccatctttttgagaggacgcttgtgattgccgcaagtttggttgggacgaaagagagaatg 43098387  T
Q  141 tgaaagagaattgaatccggcaagtcgctaattct 175  Q
    ||| | ||||||||||| ||||| | |||||||||    
T  43098386 tgacacagaattgaatctggcaaatagctaattct 43098352  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 48445194 - 48445119
Alignment:
Q  100 ttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct 175  Q
    ||||||||||||||||||||||||| |||||| | || || |||  ||| ||||||||||||| ||||||||||||    
T  48445194 ttgtggttacagcaagtttggttgggagaaaagagagaatatgactgagtattgaatccggcatgtcgctaattct 48445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 7176148 - 7176218
Alignment:
Q  60 actgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaa 130  Q
    ||||||| ||||||   ||||||||||||||||||||||||||||||| |||| ||||| || ||||||||    
T  7176148 actgagatccacaccgatttccatctctttgagaggacgcttgtggttgcagctagtttagtcggaagaaa 7176218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 13465547 - 13465671
Alignment:
Q  51 agagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaa 150  Q
    ||||||||||||||||||||||   || |||||| ||||||||||||||||||  || ||||  ||||||| |  | |||| | || || ||| | ||||    
T  13465547 agagcgagaactgagagccacaatggtctccatcgctttgagaggacgcttgtaattgcagcttgtttggtcgagataaaagagagaatgtgacacagaa 13465646  T
Q  151 ttgaatccggcaagtcgctaattct 175  Q
    |||||||||||||||  ||||||||    
T  13465647 ttgaatccggcaagttactaattct 13465671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 27816246 - 27816362
Alignment:
Q  59 aactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatcc 158  Q
    |||||||||||||||   | |||||||||||||||||| |||||||||  |||  |||||||||||||  ||| | || || |||  ||| ||||||||     
T  27816246 aactgagagccacaccgatctccatctctttgagaggatgcttgtggtcgcagtgagtttggttggaattaaagagaggatgtgactgagtattgaatca 27816345  T
Q  159 ggcaagtcgctaattct 175  Q
    || || |||||||||||    
T  27816346 ggtaactcgctaattct 27816362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 14350675 - 14350789
Alignment:
Q  51 agagcgagaactgagagccacacatgtttccatctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaa 150  Q
    ||||||||||||||| ||||||   || |||||| ||||||||||||||||||  || ||||  ||||||| |  | |||| | || || ||| | ||||    
T  14350675 agagcgagaactgagcgccacaatggtctccatcgctttgagaggacgcttgtaattgcagcttgtttggtcgagataaaagagagaatgtgacacagaa 14350774  T
Q  151 ttgaatccggcaagt 165  Q
    |||||||||||||||    
T  14350775 ttgaatccggcaagt 14350789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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