View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_high_16 (Length: 342)
Name: NF12095_high_16
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_high_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 34864746 - 34864416
Alignment:
| Q |
12 |
atggacatcagtgttttaaacgttgatggagaatcaagtagatggcttcgtgtaacagacttgggtgataatctgtttgttttgggtaaagacttaaact |
111 |
Q |
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| T |
34864746 |
atggatatcagtgttttaaacgttgatggagaatcaagtagatggcttcgtgtaacagacttgggtgataatctgtttgttttgggtaaagacttaaact |
34864647 |
T |
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| Q |
112 |
tttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttctgttgtataggcaggactgctcgttacaacttgaatagttcaggatt |
211 |
Q |
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| T |
34864646 |
tttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttctgttgtataggcaggactgctcgttacaacttgaatagttcaggatt |
34864547 |
T |
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| Q |
212 |
taagtatgttgatgatattttttggccttgttcaactttgttcaattctgacagcgtatcagatccattaaacattgaatgtgctgcagatcatgagccc |
311 |
Q |
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| T |
34864546 |
taagtatgttgatgatattttttggccttgttcaactttgttcaattctgaaagcgtatcagatccattaaacattgaatgtgctgcagatcatgagccc |
34864447 |
T |
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| Q |
312 |
tagtgcgtaaggtggatatgaccaactctgc |
342 |
Q |
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| T |
34864446 |
tagtgcgtaaggtggatatgaccaactctgc |
34864416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 342
Target Start/End: Original strand, 51859903 - 51860040
Alignment:
| Q |
205 |
caggatttaagtatgttgatgatattttttggccttgttcaactttgttcaattctgacagcgtatcagatccattaaacattgaatgtgctgcagatca |
304 |
Q |
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| T |
51859903 |
caggatttaagtatgttgaagacatttttcggctttgtccaactatgttgaattctaaccatgtatcagatccaataaacatcaagtgtgctgcagatca |
51860002 |
T |
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| Q |
305 |
tgagccctagtgcgtaaggtggatatgaccaactctgc |
342 |
Q |
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| T |
51860003 |
tgagccctagtgagtaaggtgaatatgaccaactctgc |
51860040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 51858743 - 51858828
Alignment:
| Q |
12 |
atggacatcagtgttttaaacgttgatggagaatcaagtagatggcttcgtgtaacagacttgggtgataatctgtttgttttggg |
97 |
Q |
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| T |
51858743 |
atggatatcagtgttttgaagattgatgaagaatcaagtagatggcttcgtgtaacatacttgggtgatgttctgtttgttttggg |
51858828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 9514822 - 9514730
Alignment:
| Q |
72 |
ttgggtgataatctgtttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttc |
164 |
Q |
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| T |
9514822 |
ttgggtgattattcgtttcttttgggtaaagactcaaacttttcattatcaactaaagattaccatggatttgaaagaaattgcatttacttc |
9514730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 35521111 - 35521189
Alignment:
| Q |
87 |
tttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttct |
165 |
Q |
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| T |
35521111 |
tttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttct |
35521189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 51859401 - 51859444
Alignment:
| Q |
90 |
gttttgggtaaagacttaaacttttcattgtctgctaatgatta |
133 |
Q |
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| T |
51859401 |
gttttgggtaaagacttgaacttttcattgtctgttaatgatta |
51859444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 51859832 - 51859872
Alignment:
| Q |
124 |
ctaatgattattatggatttgaaagaaactgcatctacttc |
164 |
Q |
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| T |
51859832 |
ctaatgattattatggatttgaaaaaaattgcatctacttc |
51859872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 34145901 - 34146017
Alignment:
| Q |
47 |
aagtagatggcttcgtgtaacagacttgggtgataatctgtttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaa |
146 |
Q |
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| T |
34145901 |
aagtagatggttccgtgtatcagacttgggtgatgatctgtttgtgttaggcaaagactcaaacttttcattatcagctaaagactattatggatttgaa |
34146000 |
T |
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| Q |
147 |
agaaactgcatctactt |
163 |
Q |
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| T |
34146001 |
agaaattgcatttactt |
34146017 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 35548547 - 35548475
Alignment:
| Q |
85 |
tgtttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaaagaaactgcat |
157 |
Q |
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| T |
35548547 |
tgtttgttttgggtagagactcaaacttttcattgatagctcaagactattatggatgtcaaagaaattgcat |
35548475 |
T |
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