View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12095_high_3 (Length: 540)

Name: NF12095_high_3
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12095_high_3
NF12095_high_3
[»] chr6 (8 HSPs)
chr6 (14-132)||(10102085-10102203)
chr6 (82-146)||(10079943-10080007)
chr6 (82-136)||(10084142-10084196)
chr6 (93-132)||(10104035-10104074)
chr6 (184-226)||(10080049-10080091)
chr6 (125-157)||(10102218-10102250)
chr6 (184-226)||(10084245-10084287)
chr6 (184-226)||(10096704-10096745)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 10102085 - 10102203
Alignment:
Q  14 cagagaagagaggagggatggatgaatgggaagtgagaactgtgattgacaatttattgacaagaaatatcttttaaacaaactcataaattaattatta 113  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10102085 cagagaagagaggagggatggatgaatggaaagtgagagctgtgattgacaatttattgacaagaaatatcttttaaagaaactcataaattaattatta 10102184  T
Q  114 aagaaacttattttatttt 132  Q
    | |||| || |||| ||||    
T  10102185 acgaaattttttttttttt 10102203  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 10079943 - 10080007
Alignment:
Q  82 atcttttaaacaaactcataaattaattattaaagaaacttattttattttataatctatgatat 146  Q
    |||||| ||| |||||  |||||||||||||||||||||||||||||||||||||| || |||||    
T  10079943 atctttaaaagaaactattaaattaattattaaagaaacttattttattttataatttaagatat 10080007  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 10084142 - 10084196
Alignment:
Q  82 atcttttaaacaaactcataaattaattattaaagaaacttattttattttataa 136  Q
    |||||| ||| |||||  |||||||||||||||||||||||||||||||||||||    
T  10084142 atctttaaaagaaactattaaattaattattaaagaaacttattttattttataa 10084196  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 10104035 - 10104074
Alignment:
Q  93 aaactcataaattaattattaaagaaacttattttatttt 132  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10104035 aaacttataaattaattattaaagaaacttattttatttt 10104074  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 10080049 - 10080091
Alignment:
Q  184 acttcacacgccaaagagggtacaaccgttggatttaatggct 226  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  10080049 acttcacatgctaaagagggtacaaccgttggatttaatggct 10080091  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 10102218 - 10102250
Alignment:
Q  125 tttattttataatctatgatattaagcaaaggt 157  Q
    |||||||||||||||||||||||||||||||||    
T  10102218 tttattttataatctatgatattaagcaaaggt 10102250  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 10084245 - 10084287
Alignment:
Q  184 acttcacacgccaaagagggtacaaccgttggatttaatggct 226  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  10084245 acttcacatgctaaagagggtacacccgttggatttaatggct 10084287  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 10096704 - 10096745
Alignment:
Q  184 acttcacacgccaaagagggtacaaccgttggatttaatggct 226  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  10096704 acttcacatgccaaagagg-tacaaccgttggatttaatggct 10096745  T

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