View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12095_high_5 (Length: 490)

Name: NF12095_high_5
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12095_high_5
NF12095_high_5
[»] chr2 (1 HSPs)
chr2 (1-480)||(6753437-6753916)
[»] chr4 (1 HSPs)
chr4 (1-480)||(1810618-1811097)
[»] chr8 (1 HSPs)
chr8 (1-45)||(23133493-23133537)
[»] chr3 (2 HSPs)
chr3 (1-45)||(11896343-11896387)
chr3 (1-45)||(26433606-26433650)
[»] chr1 (1 HSPs)
chr1 (1-45)||(20284044-20284088)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 6753916 - 6753437
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttgttttaggacttcctggtatgctttatgcaagttagcctcttccatgttaagtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753916 cacccacttttctctagatttttgataccaaaggagttcttcttgttttaggacttcctggtatgctttatgcaagttagcctcttccatgttaagtcta 6753817  T
Q  101 attgagtcaaccctctctagttgcatttgaacatatttaagttggccctcaatctcnnnnnnnnnnnnnaggatgttaccaaacacttcctcattgaaaa 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  6753816 attgagtcaaccctctctagttgcatttgaatatatttaagttggccctcaatctcttttttcctttttaggatgttaccaaacacttcctcattgaaaa 6753717  T
Q  201 caatagaatcagctctaaccttgtcaaggcgatgagatatatgatgattcccttggccccaagcattagttactacaatagggaaatcagcatgggttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753716 caatagaatcagctctaaccttgtcaaggcgatgagatatatgatgattcccttggccccaagcattagttactacaatagggaaatcagcatgggttaa 6753617  T
Q  301 ccaggctgcttggaatcggaagggtcttgactttctattagggataaaaccaatgccccttaaaagtattggtctatggtcagaatagcaacgaatcagg 400  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753616 ccaggctgcttggaatcgaaagggtcttgactttctattagggataaaaccaatgccccttaaaagtattggtctatggtcagaatagcaacgaatcagg 6753517  T
Q  401 ttctccacataagcttccggaaacatagtgcgccaatcacaatctccaagagctctatccagtctcttagctatcctttg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753516 ttctccacataagcttccggaaacatagtgcgccaatcacaatctccaagagctctatccagtctcttagctatcctttg 6753437  T

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Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 1810618 - 1811097
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttgttttaggacttcctggtatgctttatgcaagttagcctcttccatgttaagtcta 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1810618 cacccacttttctctagatttttgataccaaaggagctcttcttgttttaggacttcctggtatgctttatgcaagttagccttttccatgttaagtcta 1810717  T
Q  101 attgagtcaaccctctctagttgcatttgaacatatttaagttggccctcaatctcnnnnnnnnnnnnnaggatgttaccaaacacttcctcattgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||| ||||||||||    
T  1810718 attgagtcaaccctctctagttgcatttgaacatatttaagttggccctcaatctcttttttccttttcaggatgttaccaaacacttcttcattgaaaa 1810817  T
Q  201 caatagaatcagctctaaccttgtcaaggcgatgagatatatgatgattcccttggccccaagcattagttactacaatagggaaatcagcatgggttaa 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1810818 caatggaatcagctctaaccttgtcaaggcgatgagatatatgatgattcccttggccccaagcattggttactacaatagggaaatcagcatgggttaa 1810917  T
Q  301 ccaggctgcttggaatcggaagggtcttgactttctattagggataaaaccaatgccccttaaaagtattggtctatggtcagaatagcaacgaatcagg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1810918 ccaggctgcttggaatcggaagggtcttgactttctattagggataaaaccaatgccccttaaaagtattggtctatggtcagaatagcaacgaatcagg 1811017  T
Q  401 ttctccacataagcttccggaaacatagtgcgccaatcacaatctccaagagctctatccagtctcttagctatcctttg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1811018 ttctccacataagcttccggaaacatagtgcgccaatcacaatctccaagagctctatccagtctcttagctatcctttg 1811097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23133493 - 23133537
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttg 45  Q
    |||||| |||||||| ||||||||||||||||| | |||||||||    
T  23133493 cacccatttttctcttgatttttgataccaaagcatttcttcttg 23133537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11896387 - 11896343
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttg 45  Q
    |||||| |||||||| ||||||||||||||||| | |||||||||    
T  11896387 cacccatttttctcttgatttttgataccaaagcatttcttcttg 11896343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26433606 - 26433650
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttg 45  Q
    |||||| ||||||| |||||||||||||||||| | |||||||||    
T  26433606 cacccatttttctcgagatttttgataccaaagcatttcttcttg 26433650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20284088 - 20284044
Alignment:
Q  1 cacccacttttctctagatttttgataccaaaggagttcttcttg 45  Q
    |||||| |||||||| ||||||||||||||||| | |||||||||    
T  20284088 cacccatttttctcttgatttttgataccaaagcatttcttcttg 20284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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