View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_high_9 (Length: 445)
Name: NF12095_high_9
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 2673094 - 2673514
Alignment:
| Q |
9 |
gtgttgtgataggcatggaggatatggaatgaaggaaaagcaatggaactaatagattcatcatatgcagattcatattcagaatctgaagttataagat |
108 |
Q |
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| T |
2673094 |
gtgttgtgataggcatggaggctatggaatgaaggaaaagcaatggaactaatagattcatcatatgcagattcatactcagaagctgaagttataagat |
2673193 |
T |
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| Q |
109 |
gcataaatgtaggcctaatatgtgtccaagaaaaaatagaagacaggccaataatgccatcagtggtgatgatgttgaatagcgaaacatcgtcattgcc |
208 |
Q |
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| T |
2673194 |
gcataaatgtaggcctaatatgtgtccaagaaaaaatagaagacaggccaataatgccatcagtggtgatgatgttgaatagcgaaacatcgtcattgcc |
2673293 |
T |
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| Q |
209 |
acaacctaagcaccctggttttgtccttggaaggaatccaggtgaatctgattcatcttcagcagttacaataaacgaagtcacagttacaataataaat |
308 |
Q |
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| T |
2673294 |
acaacctaagcaccctggttttgtccttggaaggaatctaggtgaatccgattcatcttcagcagttacaataaacgaagtcacagttacaataataaat |
2673393 |
T |
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| Q |
309 |
ggcaggtagctaattaagtaacaatcgtgtcgattatacacattaaattttattcgtgatcttagtatgccgaaattttgtctcagattcattaagagac |
408 |
Q |
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| T |
2673394 |
ggcaggtaggtaattaagtaacaatcgtgtcgattatacacattaaattttattcgtgatcttagtatgccaaaattttgtctcagattcataaagagac |
2673493 |
T |
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| Q |
409 |
ataaaattttcatgtaagatc |
429 |
Q |
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| T |
2673494 |
ataaaattttcatgtaagatc |
2673514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 2681571 - 2681477
Alignment:
| Q |
79 |
attcatattcagaatctgaagttataagatgcataaatgtaggcctaatatgtgtccaagaaaaaatagaagacaggccaataatgccatcagtg |
173 |
Q |
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|||||||| |||||||||||||| | ||||||||| |||| || ||| |||||||||||||| |||||| ||||||| |||||| |||||| |
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| T |
2681571 |
attcatatacagaatctgaagttcttagatgcatacatgttggactattatgtgtccaagaacgtgcagaagataggccaacaatgccttcagtg |
2681477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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