View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12095_low_1 (Length: 925)
Name: NF12095_low_1
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 155 - 571
Target Start/End: Complemental strand, 31824841 - 31824425
Alignment:
| Q |
155 |
tcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcgatgacctattttcagaaaagcaaattgagaattgggagtccatggggtgt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824841 |
tcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcaatgacctattttcagaaaagcaaattgagaattgggagtccatggggtgt |
31824742 |
T |
|
| Q |
255 |
gcattttgaaactgaagcggaaacaattttacatgtacaaaaggattgtcccattggaagctagagattggtttttggtgtggacctgatgcgtcggttg |
354 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824741 |
gcattgtgaaactgaagcggaaacaattttacatgtacaaaaggattgtcccattggaagctagagattggtttttggtgtggacctgatgcgtcggttg |
31824642 |
T |
|
| Q |
355 |
gattgagctaaatatgactaattctccaatttgcaagtctcattttgattggaaggaatattgggctgtagcttgtcatcttctttggttttggaggaac |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824641 |
gattgagctaaatatgactaattctccaatttgcaagtctcattttgattggaaggaatattgggctgtagcttgtcatcttctttggttttggaggaac |
31824542 |
T |
|
| Q |
455 |
aaggatttgcatagtttggattttgtgagacctcacaaaccgtggattgtagttcagcaaagtcattatgatattgcgttgcataataataagctgcatg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824541 |
aaggatttgcatagtttggattttgtgagacctcacaaaccgtggattgtagttcagcaaagtcattatgatattgcgttgcataataataagctgcatg |
31824442 |
T |
|
| Q |
555 |
atatccccaaacagcag |
571 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31824441 |
atatccccaaacagcag |
31824425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 576 - 892
Target Start/End: Complemental strand, 31824379 - 31824045
Alignment:
| Q |
576 |
aatacggatggtgcgagtaaaagcagattgaagtcaggctgtggaggcttattgcgggatttccggtaattggatatgtggcttcactaagttccttggg |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824379 |
aatacggatggtgcgagtaaaagcagattgaagtcaggctgtggaggcttattgcgggatttccggtaattggatatgtggcttcactaagttccttggg |
31824280 |
T |
|
| Q |
676 |
gcctgtaatgcatttgctgctgaaatgcattc-----------------atgttcgaagggttacaattggctcggttgatagagttctaggctatggaa |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31824279 |
gcctgtaatgcatttgctgctgaaatgcattcgctgctgaaatgcattcatgtttgaagggttacaattggctcggttgatagagttccgggctatggaa |
31824180 |
T |
|
| Q |
759 |
ctttgtatcgactctgaagcagttgtgaatagttggaagggaggcaagatatgtagtgtggtgggttgaggattaattcagaaaatccaaggggcggagc |
858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31824179 |
ctttgtatcgactctgaagcagttgtgaatagttggaagggaggcaagatatgtagtgtggtgggttgaggattaattcagaaaatccaaggggcggagc |
31824080 |
T |
|
| Q |
859 |
cacatacaatgttg-tgggggctcatgccttcaca |
892 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
31824079 |
cacatacaatgttgttgggggctcatgccttcaca |
31824045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 5244978 - 5244761
Alignment:
| Q |
21 |
ggaggggacgatttgaggtgtaggtcgggtgatatgaacggtgaattcacagtttctgcaacttaccatttgctacgcagtaccagttacatcaataatc |
120 |
Q |
| |
|
|||| |||||||||||| ||| || ||||||||||||| |||||| ||| |||||||||| ||||||| || | ||||||| || |||||||||| |
|
|
| T |
5244978 |
ggagaggacgatttgagatgttggccgggtgatatgaaaggtgaagtcatagtttctgcagcttaccagttaccgtatagtaccaatttcatcaataata |
5244879 |
T |
|
| Q |
121 |
atgagatttggaatcaaatttggcagctgcgggttcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcgatgacctattttcaga |
220 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | ||||||||| | ||||||||||||||||||||||||||| ||| ||| |||||| |||| || | |
|
|
| T |
5244878 |
atgagatttggaatcaaatttggaggttgcggctgcaagaaaga-ttcaagttttttatttggattgttttgcacgaaagattaatgaccaatttccaaa |
5244780 |
T |
|
| Q |
221 |
aaagcaaattgagaattgg |
239 |
Q |
| |
|
|||| ||| ||| |||||| |
|
|
| T |
5244779 |
aaagtaaaatgaaaattgg |
5244761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 847
Target Start/End: Original strand, 43838867 - 43838963
Alignment:
| Q |
752 |
tatggaacttt-gtatcgactctgaagcagttgtgaatagttggaagggaggcaagatatgtagtgtggtgggttgaggattaattcagaaaatcca |
847 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| || |||| | |||||||||||||| | || |||| ||| |||| |||||||||||||||||| |
|
|
| T |
43838867 |
tatggaacttttgtatcgactctaaagcagtcgtaaataacttgaagggaggcaagacaaataatgtgttggattgacaattaattcagaaaatcca |
43838963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 567
Target Start/End: Complemental strand, 42585412 - 42585363
Alignment:
| Q |
518 |
cattatgatattgcgttgcataataataagctgcatgatatccccaaaca |
567 |
Q |
| |
|
|||||| ||| |||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
42585412 |
cattataatactgcgttacataataataagttgcatgatatcccaaaaca |
42585363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University