View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12095_low_11 (Length: 417)
Name: NF12095_low_11
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 3076311 - 3075922
Alignment:
| Q |
18 |
taaattagatgatcccgttgtgtatataattttcggaacaatggatcaagatgatcatgtggatagttttatttatagatttattttaattctttagtgg |
117 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3076311 |
taaattcgataatcccgttgtgtatataattttcggaacaatggatcaagatgatcatgtggatagttttatttatggatttattttaattctttagtgg |
3076212 |
T |
|
| Q |
118 |
cttcttcttcnnnnnnnnngtggtacatttagtggtatctttttctgtgtttggtgtatattatgatataagaaattaaacgagagccattgttacacta |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3076211 |
tttcttcttctttttttt-gtggtacatttagtggtatctttttctgtgtttggtgtatattatgatattagaaattaaacgagagccattgttacacta |
3076113 |
T |
|
| Q |
218 |
caaagaaatacatgacaagttagagttattattnnnnnnnnn-----gttagttattatagcaaacccaaacttacagtgaatacttattgcgattaagc |
312 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
3076112 |
caaagaaatacatgacaacttagagttattattcgttcaaaaaaaaagttagttattatagcaaacccaaacttacagtggatacttactgcgattaagc |
3076013 |
T |
|
| Q |
313 |
tcgtatgattgtagcataattgtttaaaattgccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctgtgctc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3076012 |
tcgtatgattgtagcataattgtttaaaattgccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctgagctc |
3075922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 2336706 - 2336761
Alignment:
| Q |
343 |
tgccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctg |
398 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||| | |||||||||||||| |
|
|
| T |
2336706 |
tgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctctg |
2336761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University