View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_low_12 (Length: 391)
Name: NF12095_low_12
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 3076311 - 3075944
Alignment:
| Q |
18 |
taaattagatgatcccgttgtgtatataattttcggaacaatggatcaagatgatcatgtggatagttttatttatagatttattttaattctttagtgg |
117 |
Q |
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| T |
3076311 |
taaattcgataatcccgttgtgtatataattttcggaacaatggatcaagatgatcatgtggatagttttatttatggatttattttaattctttagtgg |
3076212 |
T |
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| Q |
118 |
cttcttcttcnnnnnnnnngtggtacatttagtggtatctttttctgtgtttggtgtatattatgatataagaaattaaacgagagccattgttacacta |
217 |
Q |
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| T |
3076211 |
tttcttcttctttttttt-gtggtacatttagtggtatctttttctgtgtttggtgtatattatgatattagaaattaaacgagagccattgttacacta |
3076113 |
T |
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| Q |
218 |
caaagaaatacatgacaagttagagttattattnnnnnnnnn-----gttagttattatagcaaacccaaacttacagtgaatacttattgcgattaagc |
312 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
3076112 |
caaagaaatacatgacaacttagagttattattcgttcaaaaaaaaagttagttattatagcaaacccaaacttacagtggatacttactgcgattaagc |
3076013 |
T |
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| Q |
313 |
tcgtatgattgtagcataattgtttaaaattgccttaagattttgagttaaagtgtcgtgtccaactca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076012 |
tcgtatgattgtagcataattgtttaaaattgccttaagattttgagttaaagtgtcgtgtccaactca |
3075944 |
T |
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