View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_low_19 (Length: 263)
Name: NF12095_low_19
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 31824018 - 31823819
Alignment:
| Q |
39 |
aaagaaagttttgatctttgttgaatcttgttgtaacaagataaatatattatgtggaatattttctgaannnnnnnctctcgtgatatcgtgtagttgt |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
31824018 |
aaagaaagttttgatctttgttgaatcttgttgtaacaagataaatatattatgtggaatattttctgaatttttttctctcgtgatatcatgtagttgt |
31823919 |
T |
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| Q |
139 |
aaaaggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatcacgttaattaataaattatataaatattgtaggtacatta |
238 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31823918 |
aaaaggatccagctcctctaaagcgaacaactcaccttagagtgaagattgaggaatatcacgttaattaataaattatataaatattgtaggtacatta |
31823819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 37757417 - 37757523
Alignment:
| Q |
142 |
aggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca--cgttaattaataaattata--taaatattgtaggtacatt |
237 |
Q |
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||||||| ||||||||||| || ||||||||||||||||| | | ||| |||||||| |||||||||| |||| | | || |||||||||||||||| |
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| T |
37757417 |
aggatccggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacatt |
37757516 |
T |
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| Q |
238 |
ataacaa |
244 |
Q |
| |
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||||||| |
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| T |
37757517 |
ataacaa |
37757523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 37763165 - 37763271
Alignment:
| Q |
142 |
aggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca--cgttaattaataaattata--taaatattgtaggtacatt |
237 |
Q |
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| T |
37763165 |
aggatccggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacatt |
37763264 |
T |
|
| Q |
238 |
ataacaa |
244 |
Q |
| |
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||||||| |
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| T |
37763265 |
ataacaa |
37763271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 38603173 - 38603065
Alignment:
| Q |
142 |
aggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca--cgttaattaataaattata--taaatattgtaggtacatt |
237 |
Q |
| |
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||||||| |||||| |||| || ||||||||||||||||| | | ||| |||||||| |||||||||| |||| | | || |||||||||||||||| |
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| T |
38603173 |
aggatccggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacatt |
38603074 |
T |
|
| Q |
238 |
ataacaaat |
246 |
Q |
| |
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||||||||| |
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|
| T |
38603073 |
ataacaaat |
38603065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 25583989 - 25584045
Alignment:
| Q |
143 |
ggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca |
199 |
Q |
| |
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|||||| |||| ||||||| || ||||||||||||||||| | | |||||||||||| |
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|
| T |
25583989 |
ggatccggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatatca |
25584045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 28984325 - 28984289
Alignment:
| Q |
143 |
ggatccagctcctctaaagcgaacaactcactttaga |
179 |
Q |
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|||||| ||||||||||||||| |||||||||||||| |
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| T |
28984325 |
ggatccggctcctctaaagcgagcaactcactttaga |
28984289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 13866348 - 13866251
Alignment:
| Q |
151 |
ctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca--cgttaattaataaattata--taaatattgtaggtacattataacaa |
244 |
Q |
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||||| ||||| || |||||||||||| |||| | |||||| ||||||| ||||||||||||||||| | || ||||||| ||||||| ||||||| |
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| T |
13866348 |
ctcctttaaagtgagcaactcactttaaagtgtaaattgagcaatatcaaccgttaattaataaattaaaagtacatattgttggtacatgataacaa |
13866251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 18345863 - 18345756
Alignment:
| Q |
143 |
ggatccagctcctctaaagcgaacaactcactttagagtgaagattgagtaatatca--cgttaattaataaattata--taaatattgtaggtacatta |
238 |
Q |
| |
|
|||||| |||||||||||| || ||| ||||||||||||| | | || | ||||||| ||||||||||||||| | | || ||||||||||||| | | |
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| T |
18345863 |
ggatccggctcctctaaagtgagcaattcactttagagtgtaaagtgggcaatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtca |
18345764 |
T |
|
| Q |
239 |
taacaaat |
246 |
Q |
| |
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|||||||| |
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|
| T |
18345763 |
taacaaat |
18345756 |
T |
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