View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12095_low_2 (Length: 792)
Name: NF12095_low_2
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 777
Target Start/End: Original strand, 41094138 - 41094903
Alignment:
| Q |
1 |
gtaggaggaccttttgaagatgacaataatagtaactatgaaggattcaattctcaacagcagtttgattatggatccacattccatcctccaaataatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094138 |
gtaggaggaccttttgaagatgacaacaatagtaactatgaaggattcaattctcaacagcagtttgattatggatccacattccatcctccaaataatc |
41094237 |
T |
|
| Q |
101 |
ccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggattcggagtttcaagccctaaccctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094238 |
ccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggattcggagtttcaagccctaaccctaa |
41094337 |
T |
|
| Q |
201 |
ccctgatttcgttactccgtttcaaaccaatgaaactgatgatggaatcttctcttctgaaggtcctgttcttcctgatcccactcaaatgcaagaggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094338 |
ccctgatttcgttactccgtttcaaaccaatgaaactgatgatggaatcttctcttctgaaggtcctgttcttcctgatcccactcaaatgcaagaggaa |
41094437 |
T |
|
| Q |
301 |
ggctttgctagacgcgaatggcgaaggttacatttcnnnnnnnnctcttttgctgaaattaatctatatatatgtattgttacatgtaatgtgacttttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41094438 |
ggctttgctagacgcgaatggcgaaggttacatttcttttttttctcttttgctgaaattaatctatatgtatgtattgttacatgtaatgtgacttttg |
41094537 |
T |
|
| Q |
401 |
tgttatgggaaatggaagcttgtattattttgtattacaatttttatcatgcactcaatgagtaaatcagtttatagtattgttttttgaaatattacac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094538 |
tgttatgggaaatggaagcttgtattattttgtattacaatttttatcatgcactcaatgagtaaatcagtttatagtattgttttttgaaatattacac |
41094637 |
T |
|
| Q |
501 |
aaacatctaaataatacaatctgagtagaagtttcgacaaaactatttcacacaatcagaaaattcannnnnnnagtcccttataattttcgcgtggtct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41094638 |
aaacatctaaataatacaatctgagtagaagtttcgacaaaactatttcacacaatctgaaaattcatttttttagtcccttataattttcgcgtggtct |
41094737 |
T |
|
| Q |
601 |
aatttagtacttgacaaaaacaatactcaaactagtccctgacatttttatattgatgacaaagtagtccttttgttataatgagtcagaaacgattagt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41094738 |
aatttagtacttgacaaaaacaatactcaaactagtccctgacatttttatattgatgacaaagtagtccttttgttat-----------aacgattagt |
41094826 |
T |
|
| Q |
701 |
tatttgtataaagatttctggtgtgtcttttagaggatcaaattgaactcaatttgtgtcgtgatgaagaaagtaat |
777 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094827 |
tatttgtataaagatttatggtgtgtcttttggaggatcaaattgaactcaatttgtgtcgtgatgaagaaagtaat |
41094903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 685
Target Start/End: Original strand, 31317846 - 31317903
Alignment:
| Q |
628 |
caaactagtccctgacatttttatattgatgacaaagtagtccttttgttataatgag |
685 |
Q |
| |
|
||||||||||||||||||||| | | || |||||| ||||||||||||||||||||| |
|
|
| T |
31317846 |
caaactagtccctgacattttaaaaatggggacaaattagtccttttgttataatgag |
31317903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University