View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_low_23 (Length: 240)
Name: NF12095_low_23
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34864410 - 34864173
Alignment:
| Q |
1 |
ctggcatccgttcttagtcaattgtgatctatccttggactgcaagtaatttatgcattttacagttgtat-gaaaacccactttattttcttgtactgt |
99 |
Q |
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| T |
34864410 |
ctggcatccgttcttagtcaattgtgatctatccttggactgcaagtaatttatgcattttacagttgtatggaaaacccactttattttcttgtactgt |
34864311 |
T |
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| Q |
100 |
gttgtgacataaattgttct-----------tggcttggtgatttccggtacttctgttgtgcacattgactgattagtggaatatgatgtttttga--t |
186 |
Q |
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| T |
34864310 |
gttgtaacataaattgttctttttctgaatatggcttggtaatttccagtacttctgttgtgcacattgactgattagtggaatatgatgtttttgattt |
34864211 |
T |
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| Q |
187 |
tatgagtctattatttgtttgttttagcataatcatat |
224 |
Q |
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| T |
34864210 |
tatgactctattatttgtttgttttagcataatcatat |
34864173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 7945246 - 7945218
Alignment:
| Q |
146 |
ttgtgcacattgactgattagtggaatat |
174 |
Q |
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| T |
7945246 |
ttgtgcacattgactgattagtggaatat |
7945218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51860046 - 51860109
Alignment:
| Q |
1 |
ctggcatccgttcttagtcaattgtgatctatccttggactgcaagtaatttatgcattttaca |
64 |
Q |
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| T |
51860046 |
ctggcatccgttcttagtcagttgtgatctatccttggactgcaagtattttatgtattttaca |
51860109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 51860141 - 51860187
Alignment:
| Q |
74 |
aaacccactttattttcttgtactgtgttgtgacataaattgttctt |
120 |
Q |
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| T |
51860141 |
aaacccactttattttcttgtattgtgttgtgacttacattgttctt |
51860187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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