View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_low_25 (Length: 239)
Name: NF12095_low_25
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 588917 - 589131
Alignment:
| Q |
9 |
ttgtaggacataaataatcttataaaacactacatatagcaatttataagttttttacattaatagttatctatctaaattaaacacattgagggattta |
108 |
Q |
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| T |
588917 |
ttgtaggacataaataatcttataaaacactacatatcgcaatttataagttttttacattaatagttatctatctaaattaaacacattgagggattta |
589016 |
T |
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| Q |
109 |
aaaagataaattcatttannnnnnngtcattagatcgaatagaatcaattcatagttaaagaaacattaagagtttggtttagtggtagaaccacaatca |
208 |
Q |
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| T |
589017 |
aaaagacaaattcattta-ttttttgtcattaggtcgtatagaatcaattcatagttaaagaaacattaagagtttggtttagtggtagaaccacaatca |
589115 |
T |
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| Q |
209 |
ttaaattcagagattt |
224 |
Q |
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|||||||||||||||| |
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| T |
589116 |
ttaaattcagagattt |
589131 |
T |
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