View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12095_low_3 (Length: 612)
Name: NF12095_low_3
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 1328653 - 1328316
Alignment:
| Q |
10 |
tgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328653 |
tgagaagaatatctcttgctcataagcagggtcaccttcttctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttg |
1328554 |
T |
|
| Q |
110 |
ctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328553 |
ctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggat |
1328454 |
T |
|
| Q |
210 |
attcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328453 |
attcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttac |
1328354 |
T |
|
| Q |
310 |
tgccccaaaggcttttcttaatgagtttggaggcatac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328353 |
tgccccaaaggcttttcttaatgagtttggaggcatac |
1328316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 389 - 589
Target Start/End: Complemental strand, 1328274 - 1328074
Alignment:
| Q |
389 |
ggagctttcaatttggattactctatgacctgatcaaagatgttcaaaatttaaattagtttgtcatatctcataattctagcacattttactttgaact |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328274 |
ggagctttcaatttggattactctatgacctgatcaaagatgttcaaaatttaaattagtttgtcatatctcataattctagcacattttactttgaact |
1328175 |
T |
|
| Q |
489 |
atataaaatgaaattcttatatttcatgatttgtaacatgaaatgcatattttgttatatatatacttggtaaaagaagaaaacatatatgctatgaagc |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328174 |
atataaaatgaaattcttatatttcatgatttgtaacatgaaatgcatattttgttatatatatacttggtaaaagaagaaaacatatatgctatgaagc |
1328075 |
T |
|
| Q |
589 |
a |
589 |
Q |
| |
|
| |
|
|
| T |
1328074 |
a |
1328074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 1923976 - 1923654
Alignment:
| Q |
10 |
tgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttg |
109 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | ||||| || || | | |||||||||||||| ||| ||||| ||||| ||||||||| | | |||||| |
|
|
| T |
1923976 |
tgagaagaatatttcttgttcataagcacgatcaccatcagccaacaacctttgaatcaaaacaagtgtttttaaagcaactgtccaactgcttgtcttg |
1923877 |
T |
|
| Q |
110 |
ctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccggat |
209 |
Q |
| |
|
| | ||| | ||||| || || ||||||| ||| |||||||| || |||||||||||||| || |||||||| | || | | | |||||||| |||| |
|
|
| T |
1923876 |
atcaaacgtttagagagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgttaagcttagaatctctctaatgtgtctttcttcagctggat |
1923777 |
T |
|
| Q |
210 |
attcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatcctttac |
309 |
Q |
| |
|
|||||| || | || ||||| ||||| ||||| | ||| ||| | | ||||| |||||||| || |||||| ||||||||||| ||||| || || |
|
|
| T |
1923776 |
tttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgcttccaacttttgctatgcctatgcttgtttgatctttcac |
1923677 |
T |
|
| Q |
310 |
tgccccaaaggcttttcttaatg |
332 |
Q |
| |
|
||| |||| |||| ||||||||| |
|
|
| T |
1923676 |
tgctccaatggctcttcttaatg |
1923654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University