View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12095_low_8 (Length: 478)
Name: NF12095_low_8
Description: NF12095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12095_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 462
Target Start/End: Complemental strand, 588815 - 588352
Alignment:
| Q |
11 |
caaatttatgtgccaaaagtatcatttttctttatgattaggatgtttgtacaaggggttgaataaacttttggcctatagaatatatcgattaccgaaa |
110 |
Q |
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| T |
588815 |
caaatttatgtgccaaaagtatcatttttctgtttgataaggatgtttgtacaaggggttgaataaacttttggcctatagaatatatcaattaccgaaa |
588716 |
T |
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| Q |
111 |
gttataaatattttgatttcttatacccaatagaggtggacaagcatgggaacaaagccccactctatctgtatgactgttcttatacagtctcatattg |
210 |
Q |
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| T |
588715 |
gttataaatattttgatttcttatacccaataaaggtggacaagcatgggaacaaagccccactctctctgtatgactgttcttatacagtctcatattg |
588616 |
T |
|
| Q |
211 |
acttttacattaaatagctccctcacattaatcgtcgt--tag------ct----attaagataaaattgttataaaagttgtcgcaaaataattatata |
298 |
Q |
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| T |
588615 |
acttttacattaagtagctccctcacattaatcgtaatactagaatgttctacaaatacagataaaattgttataaaaattgtcgcaaaataattgtata |
588516 |
T |
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| Q |
299 |
agtattatttctcatatttataactaccatgaattagacaaaatcacaatagcaccataatcttgttgaaacttcaaagtgtaattattaataaatcgtg |
398 |
Q |
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| T |
588515 |
aatattatttctcatatttataaccaccatgaattagacaaaatcacgacagtaccgtaattttgttgaagcttcaaaatgtaattattaataaatcatg |
588416 |
T |
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| Q |
399 |
attattcttcatgattttatcaaactcatcataaatccaaacatacacttaagaggcacataca |
462 |
Q |
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| T |
588415 |
attattcatcatgattttatcaaactcatcataaatccaaacatacacttaagaggcacataca |
588352 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 27688972 - 27689023
Alignment:
| Q |
258 |
agataaaattgttataaaagttgtcgcaaaataattatataagtattatttct |
310 |
Q |
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| T |
27688972 |
agataaaattgtt-tacaagttgtcgcaaaataattgtataaatatcatttct |
27689023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 17352893 - 17352841
Alignment:
| Q |
256 |
taagataaaattgttataaaagttgtcgcaaaataattatataagtattattt |
308 |
Q |
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| T |
17352893 |
taagaaaaaattgttatataaattgtcacaaaataattgtataaatattattt |
17352841 |
T |
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