View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_high_2 (Length: 623)
Name: NF12096_high_2
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 280 - 612
Target Start/End: Complemental strand, 16420944 - 16420610
Alignment:
| Q |
280 |
taatatctttaatcatttgtcatttcaattgtatgagtaaaattgtcctaaaaagacgacaattaaaaaggaacataagaatgttaatttttaccatcct |
379 |
Q |
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| T |
16420944 |
taatatctttaatcatttatcatttcaattgtatgagtaaaattttcctacaaagacgataattaaaaaggaacataagagtgttaatttttaccatcct |
16420845 |
T |
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| Q |
380 |
agtagtttatttggttttgtccttatacacacacatagatgtaccaatatgatggccatgctaaaatatgatatgataactc--tatcatattcatatat |
477 |
Q |
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| T |
16420844 |
agtagtttgtttggttttgtccttatacacacacataggtgtaccagtatgatggtcatgctaaaacatgatatgataactctatatcatattcatatat |
16420745 |
T |
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| Q |
478 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctattctggtttgtctttgtattcatgagtataagttgggttagaaatatcttat |
577 |
Q |
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| T |
16420744 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctatcctgatttgtctttgtattcatgagtataagttgggttagaaatatcttat |
16420645 |
T |
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| Q |
578 |
catgattaaaaactcatttcttatcttttcatctc |
612 |
Q |
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| T |
16420644 |
catgattagaaactcatttcttatcttttcatctc |
16420610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 16421206 - 16421025
Alignment:
| Q |
18 |
gaatttgcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatatatagatgtccttcaattcga |
117 |
Q |
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| T |
16421206 |
gaatttgcagtacaaattgaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatatatagatgtccttcaattcga |
16421107 |
T |
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| Q |
118 |
ccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
199 |
Q |
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| T |
16421106 |
ccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
16421025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 10423519 - 10423575
Alignment:
| Q |
22 |
ttgcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggttt |
78 |
Q |
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| T |
10423519 |
ttgcagtacaaattggaagagttgcaaaggatagaattagggcaaacctgcaggttt |
10423575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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