View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_1 (Length: 718)
Name: NF12096_low_1
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 375 - 707
Target Start/End: Complemental strand, 16420944 - 16420610
Alignment:
| Q |
375 |
taatatctttaatcatttgtcatttcaattgtatgagtaaaattgtcctaaaaagacgacaattaaaaaggaacataagaatgttaatttttaccatcct |
474 |
Q |
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| T |
16420944 |
taatatctttaatcatttatcatttcaattgtatgagtaaaattttcctacaaagacgataattaaaaaggaacataagagtgttaatttttaccatcct |
16420845 |
T |
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| Q |
475 |
agtagtttatttggttttgtccttatacacacacatagatgtaccaatatgatggccatgctaaaatatgatatgataactc--tatcatattcatatat |
572 |
Q |
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| T |
16420844 |
agtagtttgtttggttttgtccttatacacacacataggtgtaccagtatgatggtcatgctaaaacatgatatgataactctatatcatattcatatat |
16420745 |
T |
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| Q |
573 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctattctggtttgtctttgtattcatgagtataagttgggttagaaatatcttat |
672 |
Q |
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| T |
16420744 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctatcctgatttgtctttgtattcatgagtataagttgggttagaaatatcttat |
16420645 |
T |
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| Q |
673 |
catgattaaaaactcatttcttatcttttcatctc |
707 |
Q |
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| T |
16420644 |
catgattagaaactcatttcttatcttttcatctc |
16420610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 16421300 - 16421025
Alignment:
| Q |
19 |
ggtgccaattgaatggaacatgcaacatttcaaaatagagggaaatatggtaaatgctgcataaaatttcataatgcagatttttcctgccgttgaattt |
118 |
Q |
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| T |
16421300 |
ggtgctaattgaatggaacatgcaacatttcaaaatagagggaaatatggtaaatgctgcataaaatttcataatgcagatttttcctgccgctgaattt |
16421201 |
T |
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| Q |
119 |
gcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatatatagatgtccttcaattcgaccacat |
218 |
Q |
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| T |
16421200 |
gcagtacaaattgaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatatatagatgtccttcaattcgaccacat |
16421101 |
T |
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| Q |
219 |
ttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
294 |
Q |
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| T |
16421100 |
ttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
16421025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 10423514 - 10423575
Alignment:
| Q |
112 |
tgaatttgcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggttt |
173 |
Q |
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| T |
10423514 |
tgaagttgcagtacaaattggaagagttgcaaaggatagaattagggcaaacctgcaggttt |
10423575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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