View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_3 (Length: 485)
Name: NF12096_low_3
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39403520 - 39403753
Alignment:
| Q |
1 |
gaaatatagtaaggatattgaagtgttctatcatgatgggcttaaagttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacg |
100 |
Q |
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|||| |||||| ||||||||||| |||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39403520 |
gaaagatagtagggatattgaaggattctctcatgatgagctaaaagttattgaatttgaaggttgtgttggcaattggtttgaaattgagtttgttacg |
39403619 |
T |
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| Q |
101 |
aatgttctaaaatatgcccataaactcgagcaaatagttgtgagatgatctagggcggattcaaaggcggcgtgagatgattagtgaaaaacttcaagga |
200 |
Q |
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| T |
39403620 |
aatgttctaaaatatgcccataaactcgagcaaatagttgtgagatgatctagggcggattcaaaggcggcgtgagatgattagtgaaaaacttcaagga |
39403719 |
T |
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| Q |
201 |
gatgaagtagtaggacgggaaaaccttgtgttag |
234 |
Q |
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| T |
39403720 |
gatgaagtagtaggacgggaaaaccttgtgttag |
39403753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 309 - 475
Target Start/End: Original strand, 39403828 - 39403993
Alignment:
| Q |
309 |
gcaaaactcattacaagtaaatatttttctacaaaaatggtgaattggtaagccacatggcataatcttatcttcatatttttatcatcgccttcttcca |
408 |
Q |
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| T |
39403828 |
gcaaaactcattacaagtaaatatttttctacaaaaatggtgaattggtaagccacatggcataatcttatcttcatatttttatcatcgccttcttcca |
39403927 |
T |
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| Q |
409 |
tcaacaaacaaaaaatgtctattcaaatacactttaaaatggcatgaaactcattgtgatgtccatc |
475 |
Q |
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| T |
39403928 |
tcaacaaacaaaaaatgtctattcaaatacacttt-aaatggcatgaaactcattgttatgttcatc |
39403993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 48107046 - 48106946
Alignment:
| Q |
44 |
aaagttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactcgagcaaatagttgtga |
143 |
Q |
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| T |
48107046 |
aaagttattgaattaggaggctgtgttggcaattggtatgaaattgaatttgttatgaatgttctaaaatatgcccacaaacttgagcaaatagttgtga |
48106947 |
T |
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| Q |
144 |
g |
144 |
Q |
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| T |
48106946 |
g |
48106946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 47929424 - 47929519
Alignment:
| Q |
44 |
aaagttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactcgagcaaatagtt |
139 |
Q |
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| T |
47929424 |
aaagttattgaatttggaggatgtgttggcaattggtttgaaattgagtttgttatgaatgttataaaatatgcacacaaacttgagaaaatagtt |
47929519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 47050992 - 47050916
Alignment:
| Q |
62 |
ggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactcgagcaaatagt |
138 |
Q |
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| T |
47050992 |
ggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgagcaaatagt |
47050916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 48106054 - 48105955
Alignment:
| Q |
44 |
aaagttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactcgagcaaatagttgtga |
143 |
Q |
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| T |
48106054 |
aaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaaaatatgttcataaacttgagcaaatggttgtga |
48105955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 48895761 - 48895828
Alignment:
| Q |
48 |
ttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatat |
115 |
Q |
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| T |
48895761 |
ttattgaattgggaggttgtgttggcaattggtttgaaattgagtttgttatgaatgttctaaaatat |
48895828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 48452961 - 48452883
Alignment:
| Q |
46 |
agttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaact |
126 |
Q |
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| T |
48452961 |
agttattgaattgggaggttgtgttggcaattcgtatgaaattgagtttgtcatgaatgt--taaaatatgcccacaaact |
48452883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 50460309 - 50460407
Alignment:
| Q |
46 |
agttattgaatttgagggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactcgagcaaatagttgtgag |
144 |
Q |
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| T |
50460309 |
agttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaatatgcccagaaacatgagcgaatagttttgag |
50460407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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