View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_4 (Length: 472)
Name: NF12096_low_4
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 39000895 - 39001322
Alignment:
| Q |
20 |
gagaggaaataatgaaaaaggttgaagaagctatagatggtttagatgttggaattttagttaatggtgctggtgtggcttatccttatgctagattttt |
119 |
Q |
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| T |
39000895 |
gagaggaaataatgaataaggttgaagaagctatagatggtttagatgttggaattttagttaatggtgctggtgtggcttatccttatgctagattttt |
39000994 |
T |
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| Q |
120 |
tcatgaggttgatttggatttgatggatactattatcaaagtgaatgttgaaggaacaacttggatcacaaaagctgtgcttcctagtatgattaacaac |
219 |
Q |
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| T |
39000995 |
tcatgaggttgatttggatttgatggatactattatcaaagtgaatgttgaaggaacaacttggattactaaagctgtgcttcctagtatgattaagaac |
39001094 |
T |
|
| Q |
220 |
aaaaaaggagctattattaacattggttctggttccactgttgtgattccttcatatcctcttgtcacactttatgcagcttcaaaagcgtaagcaagct |
319 |
Q |
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| T |
39001095 |
aaaaaaggagctattattaacattggttctggttccactgttgtgattccttcatatcctcttgtcacactttatgcagcttcaaaagcgtaagcaagct |
39001194 |
T |
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| Q |
320 |
ctataaatgtgtgtttttatttatcaaaatgcagtcataaagttcgtatattaaacatatgttatttattcaattttattcccttttcttattctttcta |
419 |
Q |
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| T |
39001195 |
ctataaatgtgtgtttttatttatcaaaatgcagtcataaagttcatatattaaacatatgtta----------tttatgcccttttcttattctttcta |
39001284 |
T |
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| Q |
420 |
aaccatgcttatggccttttagattattaagtacttcat |
458 |
Q |
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| T |
39001285 |
aaccatgcttatggccttttagatta-aaagtacttcat |
39001322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 38996264 - 38996596
Alignment:
| Q |
20 |
gagaggaaataatgaaaaaggttgaagaagctatagatggtttagatgttggaattttagttaatggtgctggtgtggcttatccttatgctagattttt |
119 |
Q |
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|||||||||||||||||| || |||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
38996264 |
gagaggaaataatgaaaagagtagaagaagcaatatatggtttagatgtgggaattttagttaatagtgctggtgtggcttacccttatgctagattttt |
38996363 |
T |
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| Q |
120 |
tcatgaggttgatttggatttgatggatactattatcaaagtgaatgttgaaggaacaacttggatcacaaaagctgtgcttcctagtatgattaacaac |
219 |
Q |
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| T |
38996364 |
tcatgaggttgatttggatttgatggatgctattatcaaagtgaatgttgaaggaacaacttggattacaaaagctgtgcttcctagtatgattaagaag |
38996463 |
T |
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| Q |
220 |
aaaaaaggagctattattaacattggttctggttccactgttgtgattccttcatatcctcttgtcacactttatgcagcttcaaaagcgtaagcaagct |
319 |
Q |
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| T |
38996464 |
agaaaaggagctattattaacattggttctggttccagtgttgtacttccttcttttcctcttgtcacaatttatgcagcatcaaaagcgtaag-tatct |
38996562 |
T |
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| Q |
320 |
ctataaatgtg-tgtttttatttatcaaaatgca |
352 |
Q |
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| T |
38996563 |
ctataaatttgttctttttatttatcaaaatgca |
38996596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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