View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_6 (Length: 377)
Name: NF12096_low_6
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 47911377 - 47911040
Alignment:
| Q |
27 |
gcacagggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcag |
126 |
Q |
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| T |
47911377 |
gcacagggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatttcgtgctgagtgtgcag |
47911278 |
T |
|
| Q |
127 |
tttgcttggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaa |
226 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47911277 |
tttgcttggaggagttccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaa |
47911178 |
T |
|
| Q |
227 |
cgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgcccgaatgctctaatgcatctagttcccaacggatcttgtcgttggagaga |
326 |
Q |
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| T |
47911177 |
cgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgaccaaatgctctaatgcatctagttcccagcggaccttgtcgttggagaga |
47911078 |
T |
|
| Q |
327 |
atggtcgtcatcgacatccctgccaccacatcaccatc |
364 |
Q |
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| T |
47911077 |
atggtcgtcatcgacatccctgccaccacatcaccatc |
47911040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 364
Target Start/End: Complemental strand, 47899531 - 47899189
Alignment:
| Q |
28 |
cacagggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcagt |
127 |
Q |
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| T |
47899531 |
cacatggcttagatgagtctgttatatatgctattccgtccttcatctataccaccacaaagtctgaacaagaagaagaatctcgtggtgagtgtgttgt |
47899432 |
T |
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| Q |
128 |
ttgcttggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaac |
227 |
Q |
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| T |
47899431 |
ttgcttggaggagtacgaagataatgatcacattcgcatccttccgttttgctcccacactttccatctcaattgtatcgacgtttggcttcgttcaaac |
47899332 |
T |
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| Q |
228 |
gctagctgtcctgtatgtcgctcctgtc------ttgttgaggaggactatctgcccgaatgctctaatgcatctagttcccaacggatcttgtcgttgg |
321 |
Q |
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|||| |||||| | |||||||| |||| || | |||||||||| | || || |||||||||||||| ||||| | |||| ||||||| | |
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| T |
47899331 |
cctagttgtcctttgtgtcgctcatgtctttactttttcgaggaggactttatgttgaaacgctctaatgcatctggttccgagcggagcttgtcgcccg |
47899232 |
T |
|
| Q |
322 |
agagaatggtcgtcatcgacatccctgccaccacatcaccatc |
364 |
Q |
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| T |
47899231 |
agagaatggttatcatcgacatccctgccaccgcatccccatc |
47899189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 198 - 363
Target Start/End: Complemental strand, 47916111 - 47915947
Alignment:
| Q |
198 |
aattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgcccgaatgctctaatgcatcta |
297 |
Q |
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|||||||||| |||||||| |||| |||| ||| ||||||| |||||| ||| | |||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
47916111 |
aattgcattgttgtttggcttcgtttaaaccctaactgtcctatatgtcactc-tatcttgttgaggagggctatctgcccaaacgctctaatgcatcta |
47916013 |
T |
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| Q |
298 |
gttcccaacggatcttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccat |
363 |
Q |
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| T |
47916012 |
gttcccagcggacattgtcatcggagagaatggtcgtcatcgacacccctaccaccacatccccat |
47915947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 47906099 - 47905986
Alignment:
| Q |
138 |
gaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtc |
237 |
Q |
| |
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|||||| |||||||| |||| | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
47906099 |
gaattcaaagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtc |
47906000 |
T |
|
| Q |
238 |
ctgtatgtcgctcc |
251 |
Q |
| |
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|| ||||||||||| |
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| T |
47905999 |
ctctatgtcgctcc |
47905986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 47908871 - 47908758
Alignment:
| Q |
138 |
gaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtc |
237 |
Q |
| |
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|||||| |||||||| |||| | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
47908871 |
gaattcaaagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtc |
47908772 |
T |
|
| Q |
238 |
ctgtatgtcgctcc |
251 |
Q |
| |
|
|| ||||||||||| |
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| T |
47908771 |
ctctatgtcgctcc |
47908758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 363
Target Start/End: Original strand, 31209506 - 31209847
Alignment:
| Q |
28 |
cacagggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcagt |
127 |
Q |
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|||| |||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
31209506 |
cacatggcttagatgagtctgttatatatgctattccgtccttcatctataccaccgcaaagtctgaacaagaagaagaatctcgtggtgagtgtgttgt |
31209605 |
T |
|
| Q |
128 |
ttgcttggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaac |
227 |
Q |
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|||||||||||| | | |||||||| ||| ||| || | ||| || ||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| |
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| T |
31209606 |
ttgcttggaggagtacgaagataatgatcccattcgcatccttccgttttgctcccacactttccatctcaattgtattgacgtttggcttcgttctaac |
31209705 |
T |
|
| Q |
228 |
gctagctgtcctgtatgtcgctcctgtc------ttgttgaggaggactatctgcccgaatgctctaatgcatctagttcccaacggatcttgtcgttgg |
321 |
Q |
| |
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||||||||||| | |||||||| |||| || | |||||||||| | || || |||||||||||||| ||||| | |||| ||||||| | |
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| T |
31209706 |
cctagctgtcctttgtgtcgctcatgtctttactttttcgaggaggactttatgttgaaacgctctaatgcatctggttccgagcggagcttgtcgcctg |
31209805 |
T |
|
| Q |
322 |
agagaatggtcgtcatcgacatccctgccaccacatcaccat |
363 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| |||| |||| |
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| T |
31209806 |
agagaatggttgtcattgacatccctgccaccgcatccccat |
31209847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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