View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_7 (Length: 350)
Name: NF12096_low_7
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 6060436 - 6060773
Alignment:
| Q |
5 |
atgatgccctccttgcctttgtcccagccttacacactagttccgtcttggatagattttgatggagttttatatgacaaattctccactacaatctttt |
104 |
Q |
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| T |
6060436 |
atgatgccctccttgtctttgtccctgccatacacacgagattcgtcttggagagatgttgatggagttttatatgacaaattctccactacaatctctt |
6060535 |
T |
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| Q |
105 |
tgagttcaagactgtctttgagtttcaagatatattctagtctctcaactatatcttcaaacatactaaccataaccctatcttgcacattgaaaaagcg |
204 |
Q |
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| T |
6060536 |
tgagttcaagactgtctttgagtttcaaaatatattctagtctctcaactatatcttcaaacttactaaccatacccctatcttgcacattgaaaaagcg |
6060635 |
T |
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| Q |
205 |
cgaaaagagattagttacctctttttgaatcacagtttttgtcgaaacttcatccaataagtcaacagctacatatacagcatctttgagatcattgagc |
304 |
Q |
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| T |
6060636 |
cgaaaagagattagttacctctttttgaatcacagtttttgtcgaaacttcatccaataagtcatcagctacatagacagcatctttgagatcattgagc |
6060735 |
T |
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| Q |
305 |
caattgttgacatcagaatccctggtttgtttcttctc |
342 |
Q |
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| T |
6060736 |
cagttgttgacatcagaatccctggtttgtttcttctc |
6060773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 41932641 - 41932576
Alignment:
| Q |
256 |
atccaataagtcaacagctacatatacagcatctttgagatcattgagccaattgttgacatcaga |
321 |
Q |
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| T |
41932641 |
atccaaaatgtcatcagcaacatagacagcatctttgagatcatcgagccatttgttaacagcaga |
41932576 |
T |
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