View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12096_low_8 (Length: 290)
Name: NF12096_low_8
Description: NF12096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12096_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39403333 - 39403060
Alignment:
| Q |
1 |
acatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggttgaattcatagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403333 |
acatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggttgaattcatagat |
39403234 |
T |
|
| Q |
101 |
aatgatcgagttcgtaccatacctctttggctccgttcaaacgctaactgtcctttacatccatcgccaacaacaacaacaaggacggacgggtggactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403233 |
aatgatcgagttcgtaccatacctctttggctccgttcaaacgctaactgtcctttacatccatcgccaacaacaacaacaaggacggacgggtggactt |
39403134 |
T |
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| Q |
201 |
tccggtcttacccccttattcatttgcttctgagtgaagctcgtcgccggagaggacagtcgacgacgtccctg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403133 |
tccggtcttacccccttattcatttgcttctgagtgaagctcgtcgccggagaggacagtcgacgacgtccctg |
39403060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47906187 - 47906059
Alignment:
| Q |
1 |
acatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggttgaattcatagat |
100 |
Q |
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|||||||||||||||||||| ||| || |||||||||||||||||| ||||| |||||||| ||||||| ||||| ||||||||| |||||||| |||| |
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| T |
47906187 |
acatgagtttgttataaatcttattccgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagat |
47906088 |
T |
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| Q |
101 |
aatgatcgagttcgtaccatacctctttg |
129 |
Q |
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| T |
47906087 |
aatgatcatgttcgtaccctccctctttg |
47906059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47908959 - 47908831
Alignment:
| Q |
1 |
acatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggttgaattcatagat |
100 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||||| ||||| |||||||| ||||||| ||||| ||||||||| |||||||| |||| |
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| T |
47908959 |
acatgagtttgttataaatcttattctgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagat |
47908860 |
T |
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| Q |
101 |
aatgatcgagttcgtaccatacctctttg |
129 |
Q |
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||||||| ||||||||| | |||||||| |
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| T |
47908859 |
aatgatcatgttcgtaccctccctctttg |
47908831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 47905944 - 47905862
Alignment:
| Q |
177 |
caacaaggacggacgggtggactttccggtcttacccccttattcatttgcttctgagtgaagctcgtcgccggagaggacag |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || | || ||||||||| |
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| T |
47905944 |
caacaaggacggacgggtggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacag |
47905862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 47908716 - 47908634
Alignment:
| Q |
177 |
caacaaggacggacgggtggactttccggtcttacccccttattcatttgcttctgagtgaagctcgtcgccggagaggacag |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || | || ||||||||| |
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| T |
47908716 |
caacaaggacggacgggtggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacag |
47908634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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