View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_high_20 (Length: 223)
Name: NF12097_high_20
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 40661524 - 40661714
Alignment:
| Q |
20 |
gcatgttcaccactaaattgattttacagttcattgataaaatataatggacaaacaaaccggtaaatatttatgtagtcgaaattggtcagagaattct |
119 |
Q |
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| T |
40661524 |
gcatgttcaccactaaattgattttacagttcattgataaaatataatggacaaacaaaccggtaaatatttatgtagtcgaaattggtcagagaattct |
40661623 |
T |
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| Q |
120 |
cagctggaagattttcaggatgtgtatggcaaatgccttgtccttccattgttgttaccaactcctcgataaacatgtgcggctctgtgctc |
211 |
Q |
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| T |
40661624 |
cagctggaagattttcaggatgtgtatagcaaatgccttgtccttccattgttgttacc-actcgtcgataaacatgtgcggctttgtgctc |
40661714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 11903972 - 11903860
Alignment:
| Q |
89 |
tttatgtagtcgaaattggtcagagaattctcagctggaagattttcaggatgtgtatggcaaatgccttg---tccttccattgttgttaccaactcct |
185 |
Q |
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|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||| || ||||||| |
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| T |
11903972 |
tttatgtagtataaattggacagagaattctcacctggaagattttcaggatgtgtatagcaaatgccttgttctccttccaatgttggtatgaactcct |
11903873 |
T |
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| Q |
186 |
cgataaacatgtg |
198 |
Q |
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| T |
11903872 |
cgataaacatgtg |
11903860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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