View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_high_8 (Length: 386)
Name: NF12097_high_8
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 52408360 - 52408001
Alignment:
| Q |
15 |
tcacctttcacaaacactgagtgacagattgctaatcctacattgtctggaaaaggtttctctgcaataacaagtaataaatcgcttattaacacttcca |
114 |
Q |
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| T |
52408360 |
tcacctttcacaaacactgagtgacagattgctaatcctacattgtctggaaaaggtttctctgcaataacaagtaataaatcgcttattaacacttcca |
52408261 |
T |
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| Q |
115 |
tatttaaatatagacattagacccttatcataaattttattctcgctttttataaaattctcttcaaattgtaataagattcaacatttgtgtaaggtga |
214 |
Q |
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| T |
52408260 |
tatttaaatatagacattagacccttatcataaattttattctcgctttttataaaattctcttcaaattgtaataagattcaacatttgtgtaaggtga |
52408161 |
T |
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| Q |
215 |
ttatatataccaaccttcaatatccctgagaagtttatcctctgatacataaattttttcaagggtctttccaattttcttctcccacaaggcgataaca |
314 |
Q |
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| T |
52408160 |
ttatatataccaaccttcaatatccctgagaagtttatcctctgatacataaattttttcaagggtctttccaattttcttctcccacaaggcgataaca |
52408061 |
T |
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| Q |
315 |
tcgttgaatgagtaaatgttcttggggggtctgaggtaaagaattttgttcaatgtcctt |
374 |
Q |
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| T |
52408060 |
tcgttgaatgagtaaatgttcttggggggtctgaggtaaagaattttgttcaatgtcctt |
52408001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 374
Target Start/End: Complemental strand, 52405629 - 52405487
Alignment:
| Q |
232 |
caatatccctgagaagtttatcctctgatacataaattttttcaagggtctttccaattttcttctcccacaaggcgataacatcgttgaatgagtaaat |
331 |
Q |
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| T |
52405629 |
caatatccttgagaagtttatcctctagaagaaaagttttttcgagggtcttcccaatcttcttctcccacaatgctacaagctcgttgaatgaaataat |
52405530 |
T |
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| Q |
332 |
gttcttggggggtctgaggtaaagaattttgttcaatgtcctt |
374 |
Q |
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| T |
52405529 |
gttctttgggggctttatgtagagaatcttattcaatgtcctt |
52405487 |
T |
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