View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_11 (Length: 319)
Name: NF12097_low_11
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7802014 - 7801709
Alignment:
| Q |
1 |
atcttcttcacatattgttgtattttcaagatcaagcatatacttactttcttgtgtaataaattcctttagatgttgcaccaattgagactcaaactcc |
100 |
Q |
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| T |
7802014 |
atcttcttcacattttgttgttttttcaagatcaaacatatacttactttcttgtgtaataaattcctttagatgttgcaccaattgagactcaaactcc |
7801915 |
T |
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| Q |
101 |
atagaatctccaattacatcgttgtaaccatgccttacaatgcaacgaaatattttccattctcttggctccacatgtcgaaatagaaacttctcttcca |
200 |
Q |
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| T |
7801914 |
atagaatctccaattacatcgttgtaaccatgccttacaatgcaacgaaatattttccattctcttggctccacatgttgaaatagaaacttctcttcca |
7801815 |
T |
|
| Q |
201 |
atgcaacactagtaattggaattgccttaatggaaacaaatacaacaactgaatgaatagttggtatgttggcaatgaagtgaaggaatattggaggaat |
300 |
Q |
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| T |
7801814 |
atgcaacactagtaattggaattgccttaatggaaacaaatacaacaactgaatgaatagttggtatgttggcaatgaagtgaaggaatattggaggaat |
7801715 |
T |
|
| Q |
301 |
tccttg |
306 |
Q |
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|||||| |
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| T |
7801714 |
tccttg |
7801709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 41129216 - 41129464
Alignment:
| Q |
58 |
aataaattcctttagatgttgcaccaattgagactcaaactccatagaatctccaattacatcgttgtaaccatgccttacaatgcaacgaaatattttc |
157 |
Q |
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| T |
41129216 |
aataaattccttgagattttgtattaattgtgactcaaactccgcaggattcccaagcacatcattgtaaccgcgtcttgcaacacatcgaaatattcta |
41129315 |
T |
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| Q |
158 |
cattctcttggctccacatgtcgaaatagaaacttctcttccaatgcaacactagtaattggaattgccttaatggaaacaaatacaacaactgaatgaa |
257 |
Q |
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| T |
41129316 |
tactctcttggttccacttgccgaaacaaaaacctctcttccaaagcaactctattaaccggaattgtcttgatagaaacgaacacaacaactgaatgaa |
41129415 |
T |
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| Q |
258 |
tagttggtatgttggcaatgaagtgaaggaatattggaggaattccttg |
306 |
Q |
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| T |
41129416 |
tggatggtacgctagctataaagtgcggaaatattggaggaattccttg |
41129464 |
T |
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