View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_13 (Length: 318)
Name: NF12097_low_13
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 13841821 - 13841571
Alignment:
| Q |
11 |
agagaatagttttgtaagtaaatgttttcccccttttggttattcatcctattcctattcaacttggataaaattgcaaggggtgaagtggtcctgcatt |
110 |
Q |
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| T |
13841821 |
agagaatagttttgtaagtaaatgttttcccccttttggttattcatcctattcctattcaacttggataaaattgcaaggggtgaagtggtcctgcatt |
13841722 |
T |
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| Q |
111 |
ctgtaagtttatttaggcgttaagtggttcgatatctagataaaagagggtttgcatattttgaacatatttcactacttgacacgagagcagaagtgaa |
210 |
Q |
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| T |
13841721 |
ctgtaagtttatttaggcgttaagtggttcgatatctagataaaagagggttggcatattttgaacatatttcactacttgacacgagagcagaagtgaa |
13841622 |
T |
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| Q |
211 |
caattatatgtaagtcattttttagctacatggttgagggctacatatgaa |
261 |
Q |
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| T |
13841621 |
caattatatgtatgtcattttttagctacatggttgagggctacatatgaa |
13841571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 33086298 - 33086464
Alignment:
| Q |
105 |
tgcattctgtaa-gtttatttaggcgttaagtggttcgatatctagataaaagagggtttgcatattttgaacatatttcactacttgacacgagagcag |
203 |
Q |
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| T |
33086298 |
tgcattctgttatgtttattgaggcgtaaagtggttggatagctggataaaagagggttggcttaattcgaacatgttttattacttggcacgagagcag |
33086397 |
T |
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| Q |
204 |
aagtgaacaattatatgtaagtcattttttagctacatggttgagggctacatatgaaatgacataagattata |
277 |
Q |
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| T |
33086398 |
aagttaacaattatatctaagtcatt-------tacattgttgtgggctacatatgaaatgacacaatattata |
33086464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 23497475 - 23497360
Alignment:
| Q |
105 |
tgcattctgtaa-gtttatttaggcgttaagtggttcgatatctagataaaagagggtttgcatattttgaacatatttcactacttgacacgagagcag |
203 |
Q |
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|||||||||| | ||||||| ||||| |||||||| |||| ||||||||||||||||| || || | |||||| ||| | |||||||||||||||||| |
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| T |
23497475 |
tgcattctgttacgtttattgtggcgtaaagtggttggatagctagataaaagagggttggcttaatccgaacatgttttattacttgacacgagagcag |
23497376 |
T |
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| Q |
204 |
aagtgaacaattatat |
219 |
Q |
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| T |
23497375 |
aagtgaacaattatat |
23497360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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