View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_14 (Length: 312)
Name: NF12097_low_14
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 8886276 - 8886575
Alignment:
| Q |
13 |
agcagagaatctcttgaaagttcatctccttagcaagtaccaacccacggtaattggcacaaagcttagcaaggaggatgtaaaatacgtctgcaaagca |
112 |
Q |
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| T |
8886276 |
agcagaaaatctcttgaaagttcatctccttagcaagtaccaacccacggtaattggcacaaagcttagcaaggaggatgtcaaatacgtctgcaaagca |
8886375 |
T |
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| Q |
113 |
acatgaataacctgcaatccaacacctagtctagtggcgaagtaaacctccaaatcctactatgatggaatttcctaagtaactgccatcaacattaaga |
212 |
Q |
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| T |
8886376 |
acctgaaaaacctgcaatccaacacctagtctagtggcgaagtaaacctccaaatcctactatgatgaaatttcctaagcaattgccatcaacattaaga |
8886475 |
T |
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| Q |
213 |
atgataaaagattgattaaaagagttccattgaactcatttatctacaatcgttggggttgaagagttagagaagcgagatataagagtggcagacaagt |
312 |
Q |
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| T |
8886476 |
atgataaaagattgattaaaagagttccattgaactcatttatctacaatcgttggggttgaagagttagagaagcgagatttaagagtggcagacaagt |
8886575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 47403301 - 47403012
Alignment:
| Q |
23 |
ctcttgaaagttcatctccttagcaagtaccaacccacggtaattggcacaaagcttagcaaggaggatgtaaaatacgtctgcaaagcaacatgaataa |
122 |
Q |
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| T |
47403301 |
ctcttgaaagttcatctcgttggcaagtaaaaaccctcgatgaatggcataaagctcagcaagaaggatgtcagatgtgcctgcaatgtaacctgaaaaa |
47403202 |
T |
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| Q |
123 |
cctgcaatccaacacctagtctagtggcgaagtaaacctccaaatcctactatgatggaatttcctaagtaactgccatcaacattaagaatgataaaag |
222 |
Q |
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| T |
47403201 |
cttgtaatccaatgtccaatttggtgtcgaagtaaacctccaaatcctgctctgatgagatttcctaaacaactgccatcaatattaagaataatacaag |
47403102 |
T |
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| Q |
223 |
attgattaaaagagttccattgaactcatttatctacaatcgttggggttgaagagttagagaagcgagatataagagtggcagacaagt |
312 |
Q |
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| T |
47403101 |
attgattagaggagttccatcgaacccatttatctgcaatcattggggatggagagctagagaagcaagatataagggtggcagataagt |
47403012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 312
Target Start/End: Complemental strand, 6328066 - 6327904
Alignment:
| Q |
150 |
cgaagtaaacctccaaatcctactatgatggaatttcctaagtaactgccatcaacattaagaatgataaaagattgattaaaagagttccattgaactc |
249 |
Q |
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||||||||||||||||||||| || |||| | ||||||||| ||| | |||||||||||||||||||| ||||||||||| | ||||||||| || | |
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| T |
6328066 |
cgaagtaaacctccaaatcctgctctgataggatttcctaaacaaccgtcatcaacattaagaatgatacaagattgattagaggagttccatcaaatcc |
6327967 |
T |
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| Q |
250 |
atttatctacaatcgttggggttgaagagttagagaagcgagatataagagtggcagacaagt |
312 |
Q |
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| T |
6327966 |
atttatctgcaatcgtcggggttggagagctagagaagcaagatattagggtggcagataagt |
6327904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 6328179 - 6328145
Alignment:
| Q |
23 |
ctcttgaaagttcatctccttagcaagtaccaacc |
57 |
Q |
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| T |
6328179 |
ctcttgaaagttcatctccttagcaagtaacaacc |
6328145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 6797547 - 6797849
Alignment:
| Q |
13 |
agcagagaatctcttgaaagttcatctccttagcaagtaccaacccacggtaattggcac--aaagcttagcaaggaggatgtaaaatacgtctgcaaa- |
109 |
Q |
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|||||| || |||||||||||||||||||||| |||||| ||||||||| | ||||| |||||| ||||| ||||||| | || |||||| |
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| T |
6797547 |
agcagaaaacctcttgaaagttcatctccttatcaagtaacaacccacgacgaatggcaagaaaagctcggcaagaaggatgtcagatgtacctgcaatt |
6797646 |
T |
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| Q |
110 |
gcaacatgaataacctgcaatccaacacctagtctagtggcgaagtaaacctccaaatcctactatgatggaatttcctaagtaactgccatcaacatta |
209 |
Q |
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| ||| |||| ||| || |||||||| | ||||| ||| ||||||||||||||||||||| || |||||||||||||||| |||| ||||| |||| |
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| T |
6797647 |
gtaacctgaaaaacttgtaatccaacgtccagtctggtgtcgaagtaaacctccaaatcctgctctgatggaatttcctaaacaactaccatctttatta |
6797746 |
T |
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| Q |
210 |
agaatgataaaagattgattaaaagagttccattgaactcatttatctacaatcgttggggttgaagagttagagaagcgagatataagagtggcagaca |
309 |
Q |
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| || |||| ||||||||||| | ||||||||| |||| | ||||||| |||||| ||||||| |||| |||||||| |||||| || ||||||| | |
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| T |
6797747 |
aaaaagatacaagattgattagaggagttccatcgaacccctttatctgcaatcgaaggggttggagagcaagagaagcaagatatcaggctggcagata |
6797846 |
T |
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| Q |
310 |
agt |
312 |
Q |
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||| |
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| T |
6797847 |
agt |
6797849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 9518267 - 9518219
Alignment:
| Q |
13 |
agcagagaatctcttgaaagttcatctccttagcaagtaccaacccacg |
61 |
Q |
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| T |
9518267 |
agcagaaaatctcttgaaaattcatctccttagcaagtaacaacccacg |
9518219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 42966529 - 42966485
Alignment:
| Q |
13 |
agcagagaatctcttgaaagttcatctccttagcaagtaccaacc |
57 |
Q |
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| T |
42966529 |
agcagaaaacctcttgaaagttcatctccttagcaagtaacaacc |
42966485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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