View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_16 (Length: 265)
Name: NF12097_low_16
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 280140 - 280322
Alignment:
| Q |
72 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
171 |
Q |
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| T |
280140 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
280239 |
T |
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| Q |
172 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
254 |
Q |
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| T |
280240 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
280322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 635712 - 635530
Alignment:
| Q |
72 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
171 |
Q |
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| T |
635712 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
635613 |
T |
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| Q |
172 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
254 |
Q |
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| T |
635612 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
635530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 821515 - 821333
Alignment:
| Q |
72 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
171 |
Q |
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| T |
821515 |
caagggcttagaatagaaacaaagaatgggtaatactgaaactaataatagttccaaaatggtgagtgttgatttttgtatagaggtattaataatacgc |
821416 |
T |
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| Q |
172 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
254 |
Q |
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| T |
821415 |
aaagtaaaatgtggcaattcaaaccgacatggctttcttgtttgctcttttaatttgctttgataatcattgaatcccatctc |
821333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 280094 - 280137
Alignment:
| Q |
1 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
44 |
Q |
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| T |
280094 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
280137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 635758 - 635715
Alignment:
| Q |
1 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
44 |
Q |
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| T |
635758 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
635715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 821561 - 821518
Alignment:
| Q |
1 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
44 |
Q |
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| T |
821561 |
aagtcgtgtttaaataacacaaatgatttattgatttgtgtatg |
821518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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