View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_3 (Length: 638)
Name: NF12097_low_3
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 160 - 631
Target Start/End: Original strand, 6394972 - 6395443
Alignment:
| Q |
160 |
tctgatatcactccaataaacgctcttatacacaggatagtttgcactcacctttaatagatatataaaatccagaaagaactcatcattctcttaacat |
259 |
Q |
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| T |
6394972 |
tctgatatcactccaataaacgctcttatacacaggatagtttgcactcacctttaatagatatataaaatccagaaagaactcatcattctcttaacat |
6395071 |
T |
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| Q |
260 |
gaaaggagcttacctcatcaaaggattacatcttgtgtgttatgtatgttagctagtctaacatagtaattcaattgagttctatagttctatcaagaat |
359 |
Q |
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| T |
6395072 |
gaaaggagcttacctcatcaaaggattacatcttgcgtgttatgtatgttagctagtctaacatagtaattcaattgagttctatagttctatcaagaat |
6395171 |
T |
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| Q |
360 |
ttgggtggaattttaccaagaatctggaaatttttgagatcccgtaagatcaaaggtaaagggaagacnnnnnnnnnactagtttaagagtttatagtgt |
459 |
Q |
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| T |
6395172 |
ttgggtggaattttaccaagaatctggaaatttttgagatcccgtaagatcaaaggtaaagagaagactttttttttactagtttaagagtttatagtgt |
6395271 |
T |
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| Q |
460 |
tactgctcctatagtatatctatcatataaaatgcatatgcnnnnnnntaggtgcattataacagttgatacatgttagccaactatgaaatttcttccc |
559 |
Q |
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| T |
6395272 |
tactgctcctatagtatatatctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgttagccaactatgaaatttcttccc |
6395371 |
T |
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| Q |
560 |
attctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttctca |
631 |
Q |
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| T |
6395372 |
attctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttctca |
6395443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 6394811 - 6394883
Alignment:
| Q |
24 |
acctccagacaaacagaaactagaaaagcatgacactgcctaacaaaacaatctcttggaattgtaagtttac |
96 |
Q |
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| T |
6394811 |
acctccagacaaacagaaactagaaaagcatgacactgcctaacaaaacaatctctcggaattgtaagtttac |
6394883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 546 - 629
Target Start/End: Original strand, 43597806 - 43597889
Alignment:
| Q |
546 |
tgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttct |
629 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || ||||| || | | ||||||||||||| |||||||||| |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttgtagattcttct |
43597889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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