View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_4 (Length: 585)
Name: NF12097_low_4
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 570
Target Start/End: Complemental strand, 49905399 - 49904847
Alignment:
| Q |
10 |
gcataggtagtgtagttagtgcaat-----ggagtagtcaattgtcacattgttaattctaggacaaaaggaccaaaaacttgggcatcagggtaaagaa |
104 |
Q |
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| T |
49905399 |
gcataggtagtgtagttagtgcaatataatggagtagtcagttgtcacattgttaattctaggacaaaaggaccaaaaacttgggcatcagggtaaagaa |
49905300 |
T |
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| Q |
105 |
ttttcgataaataggtataggaaagtaacttgtgcataatgttaatgtacaatacaatacaagtcccagggtgagagaatcagtgtcatcatattctnnn |
204 |
Q |
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| T |
49905299 |
ttttcgataaataggtataggaaagtaacttgtgcataatgttaatgtacaatacaatacaagtcccagggtgagagaatcagtgtcatcatattctccc |
49905200 |
T |
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| Q |
205 |
nnnnnnnnnnaatactcataacatcatttactcttgcagagtggggggccaaagctcttttctgttttaggggtcccctgcatttttaagggagaatatg |
304 |
Q |
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| T |
49905199 |
ccaaccccccaatactcataacatcatttactcttgcagagtggggggccaaagctcttttctgttttaggggtcccctgcatttttaagggagaatatg |
49905100 |
T |
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| Q |
305 |
ttcttttcattttggctttcaattccctattttgatgaataccagtctattcttctcgagagactatatatatagttacatagaatggacccctcttccc |
404 |
Q |
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| T |
49905099 |
ttcttttcattttggctttcaattccctattttgatgaataccaatctattcttctc--gagactatatatatagttacatagaatggacccctcttccc |
49905002 |
T |
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| Q |
405 |
aaacctctatattttgttacccgtctatttctcattctcagtcttaaatttcccttaccaaacaaagcattcaattgaaatgtattaagaa-gnnnnnnn |
503 |
Q |
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| T |
49905001 |
aaacctctatattttgttacccgtctatttctcattctcagtc------------taccaaacaaagcattcaattgaaatgtattaagaaggaaaaaca |
49904914 |
T |
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| Q |
504 |
nnnnntattagattttattacatcatgctttttggtgtgataatctaaaagaatattcagtgtgatt |
570 |
Q |
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| T |
49904913 |
aaaaatattagattttattacatcatgctttttggtgtgataatctaaaagaatattcagtgtgatt |
49904847 |
T |
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