View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_5 (Length: 512)
Name: NF12097_low_5
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 122 - 491
Target Start/End: Complemental strand, 21498444 - 21498075
Alignment:
| Q |
122 |
tccagacgaatgagtaaatattagtctaaaaactaattactaaaaatgagagaaattatcaatgtactcaccaataacggagatacgaaatcgttgaatc |
221 |
Q |
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| T |
21498444 |
tccagacgaatgagtaaatattagtctaaaaactaattattgaaaacgacagagattaacaatgtactcaccaataaaggagaaacgaaatcgttgaatc |
21498345 |
T |
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| Q |
222 |
gataagtcacttctaatggcttcaatttctgaatgtaaagtctcttcaaaccatcgataatttctgaatgttggaacttaaaaatctatatgaatgcatt |
321 |
Q |
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| T |
21498344 |
gataagtcacttctaatggcatcaatttctgaatgtaaagtctcttcaaaccatcgataatttctgaatgttggaacttaaaaatctatatgaatgcatt |
21498245 |
T |
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| Q |
322 |
tgacaagctttgaaaagttaaatagnnnnnnnnnnnnnnnnctacaatacaaaatcacagaaaaattacatttttattatttcagtgtcataagaaagat |
421 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |
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| T |
21498244 |
tgacaagctttgaaaagttaaagagaaaaagaaaaaaaaaactacaatacaaaatcacagaaaaattacatttttattaattcagttttataagaaagat |
21498145 |
T |
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| Q |
422 |
acctcatttcgtgattgatgaggaaaggaactgaattgatggaagaaagtggtggagaagggttgtggct |
491 |
Q |
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| T |
21498144 |
acctcatttggtgattgatgaggaaaggaactgaattgatggaagaaagtggtggagaagggttgtggct |
21498075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 21468690 - 21468607
Alignment:
| Q |
200 |
ggagatacgaaatcgttgaatcgataagtcacttctaatggcttcaatttctgaatgtaaagtctcttcaaaccatcgataatt |
283 |
Q |
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| T |
21468690 |
ggagatacgaaatcgttgaatcgataggcaacttctaaaggcttcaacttttgaatgtaaagtctcttcaaaccatcgataatt |
21468607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 491
Target Start/End: Complemental strand, 21503749 - 21503693
Alignment:
| Q |
435 |
attgatgaggaaaggaactgaattgatggaagaaagtggtggagaagggttgtggct |
491 |
Q |
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| T |
21503749 |
attgatgaggaaaggtactgaattgatggaagaaattggtggaaagaggttgtggct |
21503693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 21498583 - 21498515
Alignment:
| Q |
1 |
tcaaaatcactatctgtctgcaaaaatcaatagtgaaattaagtgaatatgttagttgatattttaaacacggcgaaaa |
79 |
Q |
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| T |
21498583 |
tcaaagtcactatctgtctgcaaaaatcaatagttaa----------tatgttagttgatattttaaacacagcgaaaa |
21498515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 40921122 - 40921032
Alignment:
| Q |
186 |
tactcaccaataacggagatacgaaatcgttgaatcgataagtcacttctaatggcttcaatttctgaatgtaaagtctcttcaaaccatc |
276 |
Q |
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|||| |||||||| || || || ||||| || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
40921122 |
tactgaccaataatggggagacaaaatcattaaagcggtaagtaacttctaaaggcttcaacttctgaatgtagagtctcttcaagccatc |
40921032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 14770915 - 14770952
Alignment:
| Q |
127 |
acgaatgagtaaatattagtctaaaaactaattactaa |
164 |
Q |
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| T |
14770915 |
acgaatgagtaaatattaatgtaaaaactaattactaa |
14770952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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