View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_6 (Length: 416)
Name: NF12097_low_6
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 30622112 - 30621724
Alignment:
| Q |
19 |
ataagttgcatagtaaggcttacccttgtatcctcaaatacagtttcttgagtggcatcaccaccaaaaacacgatcatatatatactgttttggattat |
118 |
Q |
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| T |
30622112 |
ataagttgcatagtaaggcttacccttgtatcctcaaatacagtttcttgagtggcatcaccaccaaaaacacgatcatatatatactgttttggattat |
30622013 |
T |
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| Q |
119 |
catctttccagagaaactcaacagtaaattcatctaccgcagtaacagcttctctttctttctcagaaacctctttttcactgataggtcttagccgaca |
218 |
Q |
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| T |
30622012 |
catctttccagagaaactcaacagtaaattcatctaccgcagtaacagcttctctttctttctcagaaacctctttttcactgataggtcttagccgaca |
30621913 |
T |
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| Q |
219 |
ataaaccctgatcttgcctttcatgtctaataaaacaagttgaaaggttaaatacagatcaggcatgtaaatatttcaaaacattcaaatagatctggtc |
318 |
Q |
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| T |
30621912 |
ataaaccctgatcttgcctttcatgtctaataaaacaagttgaaaggttaaatacagatcaggcatgtaaatatttcaaaacattcaaatagatctggtc |
30621813 |
T |
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| Q |
319 |
aattaccttctattacattaaaatatcgttttcttaaaatttgttcttctttataaagaccttccatttcggctagttgagccctttgc |
407 |
Q |
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| T |
30621812 |
aattaccttctattacattaaaatatcgttttcttaaaacttgttcttctttataaagaccttccatttcggctagttgagctctttgc |
30621724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 10156796 - 10156988
Alignment:
| Q |
32 |
taaggcttacccttgtatcctcaaatacagtttcttgagtggcatcaccaccaaaaacacgatcatatatatactgttttggattatcatctttccagag |
131 |
Q |
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| T |
10156796 |
taagacttgcccttgtatcttcaaatacatcttcttgagttgcattgccgttaaacacgcgatcatatatgtgttgctttgctttatcatctttccatgg |
10156895 |
T |
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| Q |
132 |
aaactcaacagtaaattcatctaccgcagtaacagcttctctttctttctcagaaacctctttttcactgataggtcttagccgacaataaac |
224 |
Q |
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| T |
10156896 |
atgctcaacagtaaactcgtctacataagtaagaacttttctttctttcacggcaatctctttttcaccaaggggtcttagacgacagtaaac |
10156988 |
T |
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