View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_7 (Length: 390)
Name: NF12097_low_7
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 49017484 - 49017667
Alignment:
| Q |
1 |
tagactcaggtgtatgtatctctggtggtataattaacatgtcacaaaaaattatttaaaagttatcaactaaactaaacataatgataaacgtcatttg |
100 |
Q |
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| T |
49017484 |
tagactcaggtgtatgtatctctggtggtataattaacatgtcacaaaaaattatttaaaagttatcaactaaactaaacataatgataaacgtcatttg |
49017583 |
T |
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| Q |
101 |
attgtttttaaaactatctagtgacttggagaataaagagaatcgtttttaattttgatgttgatatgggtgcatgcatgcttt |
184 |
Q |
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| T |
49017584 |
attgtttttaaaactatctagtgacttggagaataaagagaatcgtttttaattttgatgttgatatgggtgcatgcatgcttt |
49017667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 49017723 - 49017868
Alignment:
| Q |
240 |
gccacctagctagctacatgaatttgcatgaagaataaaaatgatgtgagtgcttttcatttcacgtacggggcctccctcattcaaggatattctcatt |
339 |
Q |
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| T |
49017723 |
gccacctagctagctacatgaatttgcatgaagaataaaaatgatgtgagtgcttttcatttcacgtacggggcctccctcattcaaggatattctcatt |
49017822 |
T |
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| Q |
340 |
atttacatgccacgcctgattcttttttgttttctttcttctctct |
385 |
Q |
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| T |
49017823 |
atttacatgccacgcctgattcttttttgttttctttcttctctct |
49017868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 7083449 - 7083380
Alignment:
| Q |
288 |
agtgcttttcatttcacgtacggggcctccctcattcaaggatattctcattatttacatgccacgcctgat |
359 |
Q |
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| T |
7083449 |
agtgcatttcatttcacgtacggga--tccacaattcaaggatattctaattatttacatgtcacgcctgat |
7083380 |
T |
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