View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12097_low_9 (Length: 320)
Name: NF12097_low_9
Description: NF12097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12097_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 7947945 - 7948215
Alignment:
| Q |
16 |
agatagtgatattgttttgcaacttgtaaaattaaattaatattagaaaatatattggactggtctcagttttaatagaaagnnnnnnncttcaaatttt |
115 |
Q |
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| T |
7947945 |
agatagtgatattgttttgcaacttgtaaaattaaattaatattagaaaatatattggactggtctcagttttaatagaaagaaaaaaacttcaaatttt |
7948044 |
T |
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| Q |
116 |
atgttgtttaataggaaaattaataagagattaaaataacactagaataaatacacataatttcttgttatagtacaaattaacgtgacagcacatcatt |
215 |
Q |
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| T |
7948045 |
atgttgtttaataggaaaattaacaagagattaaaataacactagaataaatacacatgatttcttgttatagtacaaattgacgtgacaacacatcatt |
7948144 |
T |
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| Q |
216 |
taacgtatgcatgtaaattaaataaactcaactgtaatcgcctcagcctcatgtgaaaatacctagtcaaa |
286 |
Q |
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| T |
7948145 |
taacgtatgcatgtaaattaaataaactcaattgtaatcgcctcggcctcatgtgaaaatacctagtcaaa |
7948215 |
T |
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