View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12098_high_2 (Length: 528)
Name: NF12098_high_2
Description: NF12098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12098_high_2 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Complemental strand, 8342072 - 8341577
Alignment:
| Q |
15 |
cagagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattccca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342072 |
cagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattccca |
8341973 |
T |
|
| Q |
115 |
agttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341972 |
agttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
8341873 |
T |
|
| Q |
215 |
tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcgtgtagatcaagcttttc |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8341872 |
tcaaataactgaggtcaagatatgttagatgttacaactcagttattgaaggattgatttcaccactcaaataatgtgaatggtgtagatcaagcttttc |
8341773 |
T |
|
| Q |
315 |
aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341772 |
aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataatcatctcga |
8341673 |
T |
|
| Q |
415 |
acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggac |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341672 |
acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggac |
8341577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 79 - 464
Target Start/End: Complemental strand, 26727604 - 26727222
Alignment:
| Q |
79 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
178 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | || |||||||||||| |||||||||||| ||| ||| |
|
|
| T |
26727604 |
ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga |
26727505 |
T |
|
| Q |
179 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
278 |
Q |
| |
|
| || |||||||| ||||| || ||||| ||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26727504 |
aggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaca |
26727405 |
T |
|
| Q |
279 |
actcaaataatatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccg |
378 |
Q |
| |
|
| | | |||| || | || | |||||| ||| ||||||||| |||| ||||||||| | ||| |||||||||||||||| ||| || || | |
|
|
| T |
26727404 |
attta---aatacaaaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatca |
26727308 |
T |
|
| Q |
379 |
tccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt |
464 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26727307 |
tccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt |
26727222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
130 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8333143 |
gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
8333044 |
T |
|
| Q |
131 |
tcccctc |
137 |
Q |
| |
|
| ||||| |
|
|
| T |
8333043 |
ttccctc |
8333037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 504
Target Start/End: Original strand, 29813 - 30292
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
130 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| || |||| ||| ||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
29813 |
gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct |
29912 |
T |
|
| Q |
131 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
230 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
29913 |
tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc |
30012 |
T |
|
| Q |
231 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| | || |||||||||||||||||||||||| |
|
|
| T |
30013 |
aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg |
30112 |
T |
|
| Q |
325 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt |
424 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
30113 |
gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt |
30212 |
T |
|
| Q |
425 |
tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatg |
504 |
Q |
| |
|
| || |||| ||||| ||||||||||| |||||||||| ||| || ||||| || || ||||||||||||| ||||| |
|
|
| T |
30213 |
tcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaacaatg |
30292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 504
Target Start/End: Complemental strand, 168979 - 168500
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
130 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| || |||| ||| ||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
168979 |
gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct |
168880 |
T |
|
| Q |
131 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
230 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
168879 |
tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc |
168780 |
T |
|
| Q |
231 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| | || |||||||||||||||||||||||| |
|
|
| T |
168779 |
aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg |
168680 |
T |
|
| Q |
325 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt |
424 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
168679 |
gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt |
168580 |
T |
|
| Q |
425 |
tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatg |
504 |
Q |
| |
|
| || |||| ||||| ||||||||||| |||||||||| ||| || ||||| || || ||||||||||||| ||||| |
|
|
| T |
168579 |
tcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaacaatg |
168500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 174003 - 173503
Alignment:
| Q |
16 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
115 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||| ||||| || ||||| | || |||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
174003 |
agagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaa |
173904 |
T |
|
| Q |
116 |
gttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtatt |
215 |
Q |
| |
|
||| | ||||| |||||| |||||| ||||||||| |||||||||| || || |||||||| || ||||||||||||| ||||||| ||||||||| |
|
|
| T |
173903 |
gttcaaaaggaaccttcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtatt |
173804 |
T |
|
| Q |
216 |
caaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagc |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | || | || |||||||| |
|
|
| T |
173803 |
caaataactgaggtctaaatatgttagattttgtaactcagttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaaga |
173704 |
T |
|
| Q |
310 |
ttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcat |
409 |
Q |
| |
|
||| ||||||||| |||| |||||||||||| ||| ||||||||||||||||| || || ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
173703 |
ctttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataatcat |
173604 |
T |
|
| Q |
410 |
ctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaagga |
509 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||| | || ||||| || || || ||||||||||| |||||||||| |
|
|
| T |
173603 |
cttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttcatgtctccattctttgttgttaagttgaacccaacaatgaagga |
173504 |
T |
|
| Q |
510 |
c |
510 |
Q |
| |
|
| |
|
|
| T |
173503 |
c |
173503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 79 - 509
Target Start/End: Original strand, 44785757 - 44786189
Alignment:
| Q |
79 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
178 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44785757 |
ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga |
44785856 |
T |
|
| Q |
179 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
278 |
Q |
| |
|
| |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
44785857 |
aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtctagatattttagatgtcgcagctcagttattgaaggattgattacacc |
44785956 |
T |
|
| Q |
279 |
actcaaataatatgaatcgtgta-gatcaagcttttcaac--ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttgga |
375 |
Q |
| |
|
|||||||||| || || || | || || || | ||| ||| || ||||| ||||||||||||| ||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
44785957 |
actcaaataacgtgtttc-tgaaccatgcagattctgaacatatatccagtttggttgttgcattgaactccttcccatttgcaacaatctgcatttgga |
44786055 |
T |
|
| Q |
376 |
ccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccat |
475 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||| ||||||||||||| || || | |
|
|
| T |
44786056 |
ccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtgcttgtctctcactcactttgcactttgtgtctccct |
44786155 |
T |
|
| Q |
476 |
taattatttttgagttgaacccagcaatgaagga |
509 |
Q |
| |
|
| | || ||||||||||||||||||||||||| |
|
|
| T |
44786156 |
tctcttttattgagttgaacccagcaatgaagga |
44786189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 125 - 464
Target Start/End: Complemental strand, 44611786 - 44611441
Alignment:
| Q |
125 |
gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact |
224 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
44611786 |
gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact |
44611687 |
T |
|
| Q |
225 |
gaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaa------ataatatgaatcgtgtagatcaagcttttcaaca |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || | || |||||||| ||| |||| |
|
|
| T |
44611686 |
gaggtttagatatgttagatgttgcaactcagttattgaaggattgatttcaccaaacaatcggcgtcgatacgagccatgcagatcaagactttgaaca |
44611587 |
T |
|
| Q |
319 |
taaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgc |
418 |
Q |
| |
|
||||| |||||| |||||||||||| ||| ||||||||||||||||| ||| || ||| |||||||||| ||||||||| ||||| |||||| ||| | |
|
|
| T |
44611586 |
taaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccatactcatcttgaaggt |
44611487 |
T |
|
| Q |
419 |
cttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt |
464 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44611486 |
cttgtttaaacgtgaggagtgcacgtctctccctctctttgcactt |
44611441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 44144990 - 44144710
Alignment:
| Q |
16 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
115 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| ||||| || ||||| | || | || ||||||| ||||| ||||||||||||||| |
|
|
| T |
44144990 |
agagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaa |
44144891 |
T |
|
| Q |
116 |
gttgagtaggaatcttcccctcataaccaccatttgagagatcaa-ggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
214 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||||| || |||||||||||||| |||||||||| ||||| |
|
|
| T |
44144890 |
gttgagcaggaatcttcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtat |
44144791 |
T |
|
| Q |
215 |
tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaat |
295 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44144790 |
tcaaataacttaggtctagatgtgttagatgttgcagcacagttattgaaggattgatttcaccactcaaatcatatgaat |
44144710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 79 - 498
Target Start/End: Complemental strand, 35899124 - 35898699
Alignment:
| Q |
79 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
178 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| ||| |||| |||||||||||| || |||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
35899124 |
ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga |
35899025 |
T |
|
| Q |
179 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
278 |
Q |
| |
|
| || |||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||| |||| ||||||| || |
|
|
| T |
35899024 |
aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcc |
35898925 |
T |
|
| Q |
279 |
actcaaata------atatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagtt |
372 |
Q |
| |
|
|||||||| | |||| | || | |||||| ||| || |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
35898924 |
tctcaaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcattt |
35898825 |
T |
|
| Q |
373 |
ggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgc |
472 |
Q |
| |
|
|||| || ||||||| |||||||| || || || ||| ||| |||||||||||| |||||| || |||||||||||||||||||| || ||||| | |
|
|
| T |
35898824 |
ggactatcattccatgtagacaacataccgtactcgtcttgaaggccttgtttgaaaccgaggagagcatgtctctccctctctttgcagttggtatctc |
35898725 |
T |
|
| Q |
473 |
cattaattatttttgagttgaaccca |
498 |
Q |
| |
|
||||| |||| ||||||||||||| |
|
|
| T |
35898724 |
cattatctattgctgagttgaaccca |
35898699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 11544676 - 11544933
Alignment:
| Q |
16 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
115 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||| ||||| || ||||| | || |||| ||||||| ||| ||||||||||| |||| |
|
|
| T |
11544676 |
agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa |
11544775 |
T |
|
| Q |
116 |
gttgagtag----gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactag |
211 |
Q |
| |
|
|||||| || |||||||| | | |||| || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| |||||| | |
|
|
| T |
11544776 |
gttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttgagtgaaaa |
11544875 |
T |
|
| Q |
212 |
tattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggatt |
269 |
Q |
| |
|
|| ||| | ||||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11544876 |
taatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatt |
11544933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 44144664 - 44144596
Alignment:
| Q |
399 |
gccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgt |
467 |
Q |
| |
|
|||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144664 |
gccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactttgt |
44144596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
| Q |
16 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
115 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||||||||||||| |||| || ||||| || |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
44612199 |
agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa |
44612100 |
T |
|
| Q |
116 |
gttgagtaggaatct |
130 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
44612099 |
gttgagaaggaatct |
44612085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 464
Target Start/End: Original strand, 11544990 - 11545143
Alignment:
| Q |
311 |
tttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatc |
410 |
Q |
| |
|
||| ||||||||| ||||| |||||||| ||| |||||||||||| || ||||| | || || || ||||||| ||||||||| |||| | ||| |
|
|
| T |
11544990 |
tttgaacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatc |
11545089 |
T |
|
| Q |
411 |
tcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt |
464 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
11545090 |
ttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcactt |
11545143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 31 - 510
Target Start/End: Original strand, 29228546 - 29229023
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29228546 |
gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct |
29228645 |
T |
|
| Q |
131 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
230 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
29228646 |
tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc |
29228745 |
T |
|
| Q |
231 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg |
324 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | | ||| || |||||||| ||| ||||||||| |
|
|
| T |
29228746 |
tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca |
29228845 |
T |
|
| Q |
325 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt |
424 |
Q |
| |
|
||||| ||||||||| || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| ||| |||||| || |||||||| |
|
|
| T |
29228846 |
gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt |
29228937 |
T |
|
| Q |
425 |
tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggac |
510 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| || || || |||||||||| ||||| ||||| |
|
|
| T |
29228938 |
tgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggac |
29229023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 31 - 510
Target Start/End: Original strand, 29341845 - 29342322
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29341845 |
gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct |
29341944 |
T |
|
| Q |
131 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
230 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
29341945 |
tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc |
29342044 |
T |
|
| Q |
231 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatat------gaatcgtgtagatcaagcttttcaacataaccg |
324 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| | | ||| || |||||||| ||| ||||||||| |
|
|
| T |
29342045 |
tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataacca |
29342144 |
T |
|
| Q |
325 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt |
424 |
Q |
| |
|
||||| ||||||||| || ||||||||| ||||| |||||||||||||| ||||||| | |||||||| ||| |||||| || |||||||| |
|
|
| T |
29342145 |
gtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtt |
29342236 |
T |
|
| Q |
425 |
tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggac |
510 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| || || || |||||||||| ||||| ||||| |
|
|
| T |
29342237 |
tgaacctgagcagtgcttgtctctccctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggac |
29342322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 457
Target Start/End: Original strand, 29508253 - 29508409
Alignment:
| Q |
301 |
agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc |
400 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||| || |||| |||||||||||| ||||||||||| |
|
|
| T |
29508253 |
agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc |
29508352 |
T |
|
| Q |
401 |
cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctt |
457 |
Q |
| |
|
|||| |||||| ||| ||||| |||||| |||||||||| | ||||||| |||||| |
|
|
| T |
29508353 |
catactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctctt |
29508409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
| Q |
34 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag |
116 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || |||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
29508115 |
agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag |
29508197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
| Q |
31 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| || ||||| | ||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
29507536 |
gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg |
29507624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 20761969 - 20762047
Alignment:
| Q |
383 |
tccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgca |
461 |
Q |
| |
|
|||||| ||| | |||||||||||||||| | | ||||||||||||| | | |||||| | |||||||||||||||||| |
|
|
| T |
20761969 |
tccatgtggaaagcatgccataatcatcttggaggccttgtttgaaccttaagagtgcttctctctccctctctttgca |
20762047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
| Q |
34 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || ||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507611 |
agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg |
29507696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
| Q |
34 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || ||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507683 |
agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg |
29507768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
| Q |
81 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507874 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29507912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
| Q |
81 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507946 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29507984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
| Q |
81 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29508090 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29508128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
| Q |
34 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
|
|||||||| |||||||| || ||| ||||| || ||||| | ||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
29507755 |
agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg |
29507840 |
T |
|
Back To:
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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
| Q |
34 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
119 |
Q |
| |
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|
| T |
29507971 |
agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg |
29508056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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