View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12098_low_1 (Length: 782)
Name: NF12098_low_1
Description: NF12098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12098_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 325 - 764
Target Start/End: Complemental strand, 17907372 - 17906926
Alignment:
| Q |
325 |
catgtcattaatcatatattcaatgttaagaaattggatcgagcatttcctaaaaaccttcttgaacctcttaatgaatttaacaagtaattcatatact |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |
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| T |
17907372 |
catgtcattaatcatatattcaatgttaagaaattggatcgagcatttcctaaaaaccttcttgaacctcttaatgaatttagcaagtaattcgtctact |
17907273 |
T |
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| Q |
425 |
tattatctaatgttcattagatcggttttcgtaacctcttgcagaggccaatagaacctataaatatggagacatatttttatgtattcccatgttagga |
524 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17907272 |
tattgtctaatgttcgttagatcggttttcgtaacctcttgcagaggccaatagaacctttaaatatggagacatatttttatgtattcccatgttagga |
17907173 |
T |
|
| Q |
525 |
taaattttggtttgagggaagaataccacgagaatgttgttcttgtaaatgataaagggaacaactacaacttgtggaactccttacgcttccgctcact |
624 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
17907172 |
taaagtttggtttgagcgaagaataccacgagaatgttgttcttgtaaatgataaagggaacaactacaacttgtggaactccttacgcttccccccact |
17907073 |
T |
|
| Q |
625 |
acactccacatt-------gaatctactaatatgctccatagtcaatttgcaatcttccccgagaaggtaattgagtaaggatgcttataacctttgagc |
717 |
Q |
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| T |
17907072 |
gcactccacattgaatattgaatcttctgatatgctccatagtcaatttgcaatcttccccgagaaggtagttgagtaaggagacttataacctttgagc |
17906973 |
T |
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| Q |
718 |
agaggcaccaatttgttgatccactctacatatgggttcctatacac |
764 |
Q |
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| T |
17906972 |
agaggcactaatttgttgatccactctacatatgggttcctatacac |
17906926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 17914061 - 17913944
Alignment:
| Q |
23 |
gataggttgctgaggagacatggcggagggattaactaggagaagggagaatttgctatgaagaagagagtaagagagaagcgcgaataaggaaggtata |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
17914061 |
gataggttgctgaggagacatggcggagggattaactaggagaagggagaatttgctat---gacgagagtaagagagaagcgcgaacaaggaagg---- |
17913969 |
T |
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| Q |
123 |
tatatgattagggttttcaaagttt |
147 |
Q |
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| T |
17913968 |
tatatgattagggttttcaaagttt |
17913944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 17910460 - 17910391
Alignment:
| Q |
260 |
cttgggaagccttttcattcaaatcatgacacacttacccaaccagtctcttttagatgtgggtgcatgt |
329 |
Q |
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| T |
17910460 |
cttgggaagccttttcattcaaatcataacacacttgcccaaccagtatcttttagatgtgggtgcatgt |
17910391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 17912956 - 17912920
Alignment:
| Q |
159 |
ataagtttgtttttcttgtttcttttcgctcatatat |
195 |
Q |
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| T |
17912956 |
ataagtttgtttttcttgtttcttttcgctcatatat |
17912920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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