View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12098_low_7 (Length: 237)
Name: NF12098_low_7
Description: NF12098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12098_low_7 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 6479053 - 6479264
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagata |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6479053 |
agaagcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagata |
6479152 |
T |
|
| Q |
109 |
tctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6479153 |
tctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagctttaactacaaatccatttgaat |
6479252 |
T |
|
| Q |
209 |
gtaggctcaatg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
6479253 |
ctaggctcaatg |
6479264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 6736947 - 6736737
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatat |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
6736947 |
gaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagattt |
6736848 |
T |
|
| Q |
110 |
ctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6736847 |
ctactgatgcaatgctaaataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
6736748 |
T |
|
| Q |
210 |
taggctcaatg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
6736747 |
taggctcaatg |
6736737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 6553510 - 6553720
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatat |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| | |
|
|
| T |
6553510 |
gaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagattt |
6553609 |
T |
|
| Q |
110 |
ctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
209 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
6553610 |
ctactgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagctttaactacaaatccatttgaatg |
6553709 |
T |
|
| Q |
210 |
taggctcaatg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
6553710 |
taggctcaatg |
6553720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 8455611 - 8455401
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatat |
109 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
8455611 |
gaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagattt |
8455512 |
T |
|
| Q |
110 |
ctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8455511 |
ctactgatgcaatgctaaataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttatctagaaatccatttgaatc |
8455412 |
T |
|
| Q |
210 |
taggctcaatg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
8455411 |
taggctcaatg |
8455401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 8590686 - 8590476
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
8590686 |
gaagcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagattt |
8590587 |
T |
|
| Q |
110 |
ctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590586 |
ctactgatgcaatgctaaataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagctttaactacaaatccatttgaaac |
8590487 |
T |
|
| Q |
210 |
taggctcaatg |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
8590486 |
caggctcaatg |
8590476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 6948232 - 6948016
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaa------gaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatg |
103 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
6948232 |
gaagcagagataaagcagtaccaaaagaaatatgtgaatgtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatg |
6948133 |
T |
|
| Q |
104 |
agatatctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatt |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6948132 |
agatttctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatt |
6948033 |
T |
|
| Q |
204 |
tgaatgtaggctcaatg |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6948032 |
tgaatgtaggctcaatg |
6948016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 6519233 - 6519443
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagata |
108 |
Q |
| |
|
|||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
6519233 |
agaagcagagctgaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
6519332 |
T |
|
| Q |
109 |
tctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaat |
208 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6519333 |
tctactgatgcaatgatatataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagctttaactggaaatccatttgaat |
6519432 |
T |
|
| Q |
209 |
gtaggctcaat |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
6519433 |
ctaggctcaat |
6519443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 5281594 - 5281466
Alignment:
| Q |
24 |
gcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatatctactgatgcaatg |
123 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||| |||||||||| | | ||||| ||||||||| | || |||||||| ||||||| ||| |
|
|
| T |
5281594 |
gcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaa |
5281495 |
T |
|
| Q |
124 |
ctaaataagctgaaagctgaatctgaacc |
152 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |
|
|
| T |
5281494 |
ctgaataagctgaaagatgaatctgaacc |
5281466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 5299686 - 5299588
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagat |
107 |
Q |
| |
|
|||||| |||| |||||| ||||||||| ||| |||||||||||||||| ||| |||||||||||| ||||||||||||| ||||| || |||||||| |
|
|
| T |
5299686 |
agaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagat |
5299588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 5251124 - 5250981
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagata |
108 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||| | ||||| | ||||| || ||||||||||| |
|
|
| T |
5251124 |
agaagcggagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagatt |
5251025 |
T |
|
| Q |
109 |
tctactgatgcaatgctaaataagctgaaagctgaatctgaacc |
152 |
Q |
| |
|
| ||||||||| || || |||||||||||||||||| |||| |
|
|
| T |
5251024 |
gcaactgatgcaccactgaagaagctgaaagctgaatctcaacc |
5250981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 4388017 - 4388080
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
72 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4388017 |
agaagcggagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacat |
4388080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 5269011 - 5268948
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
72 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
5269011 |
agaagctgagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
5268948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 8479979 - 8480041
Alignment:
| Q |
45 |
gaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagat |
107 |
Q |
| |
|
|||||| || ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||| |
|
|
| T |
8479979 |
gaagaattgacttgatgaacttaaacatgttgtttatgaagcaaaccaactattacatgagat |
8480041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 8568067 - 8568119
Alignment:
| Q |
21 |
aaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatg |
73 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||| || |||| ||||||| |
|
|
| T |
8568067 |
aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatg |
8568119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 6549 - 6759
Alignment:
| Q |
10 |
gaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaactattagatgagatat |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| | |
|
|
| T |
6549 |
gaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagattt |
6648 |
T |
|
| Q |
110 |
ctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccactaatttattgggcttggtttcagctttaactacaaatccatttgaatg |
209 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6649 |
ctactgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagctttaactacaaatccatttgaatg |
6748 |
T |
|
| Q |
210 |
taggctcaatg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
6749 |
taggctcaatg |
6759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 41068400 - 41068482
Alignment:
| Q |
9 |
agaagcagagataaagcagtaccaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttctgtatgaagcagaccaa |
93 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
41068400 |
agaagcagagctataacagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgt--tgtttgaagcagaccaa |
41068482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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