View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12098_low_8 (Length: 226)
Name: NF12098_low_8
Description: NF12098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12098_low_8 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8455508 - 8455283
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
8455508 |
ctgatgcaatgctaaataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttatctagaaatccatttgaatctag |
8455409 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8455408 |
gctcaatgaacaactggataaactagaatttcttgcaaagaaaaggaaagagttgagattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
8455309 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| ||||||||||||| |
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| T |
8455308 |
tggaaaccttcaaaaaggttgtcatc |
8455283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8590583 - 8590358
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||| | || |
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|
| T |
8590583 |
ctgatgcaatgctaaataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagctttaactacaaatccatttgaaaccag |
8590484 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
8590483 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccctgtgctagtaacgaaggcttagtcagt |
8590384 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
8590383 |
tggaaaccttcaaaaaggttgtcatc |
8590358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6736844 - 6736619
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |
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|
| T |
6736844 |
ctgatgcaatgctaaataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtag |
6736745 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
6736744 |
gctcaatgaacagctcgataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagt |
6736645 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| ||||||||||||| |
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| T |
6736644 |
tggaaaccttcaaaaaggttgtcatc |
6736619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6948123 - 6947898
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |
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|
| T |
6948123 |
ctgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtag |
6948024 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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|
| T |
6948023 |
gctcaatgaacagctcgataaactagaacttcttgcaaagaaaaagaaagagttgggattgggagaaagtccttgcgctagtaatgaaggcttagtcagt |
6947924 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| |||| |||||||| |
|
|
| T |
6947923 |
tggaaaccttcaaaaagattgtcatc |
6947898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6479157 - 6479382
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
6479157 |
ctgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagctttaactacaaatccatttgaatctag |
6479256 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||| ||||||| |||||||||||||||||| |
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|
| T |
6479257 |
gctcaatgaacaactggataaactagaatttcttgcaatgcaaaagtaggtgttgggattggcagaaggtcccagtgctagtaatgaaggcttagtcagt |
6479356 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| |||| |||||||| |
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| T |
6479357 |
tggaaaccttcaaaaagattgtcatc |
6479382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6553613 - 6553835
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6553613 |
ctgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagctttaactacaaatccatttgaatgtag |
6553712 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6553713 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagt |
6553812 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtc |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
6553813 |
tggaaaccttcaaaaaggttgtc |
6553835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6519337 - 6519562
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6519337 |
ctgatgcaatgatatataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagctttaactggaaatccatttgaatctag |
6519436 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
||||||| ||| |||||| | ||||||| ||||||| | |||| ||||| | ||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
6519437 |
gctcaataaactactggagacactagaatctcttgcacaacaaacgaaaaggctgggattggaagttggtccttgtgctagtaatgaaggcttagtcagt |
6519536 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| || | |||||||| |
|
|
| T |
6519537 |
tggaaaccttcaaaacgattgtcatc |
6519562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6652 - 6877
Alignment:
| Q |
1 |
ctgatgcaatgctaaataagctgatagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctag |
100 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6652 |
ctgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagctttaactacaaatccatttgaatgtag |
6751 |
T |
|
| Q |
101 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6752 |
gctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagt |
6851 |
T |
|
| Q |
201 |
tggaaaccttcacaaaggttgtcatc |
226 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
6852 |
tggaaaccttcaaaaaggttgtcatc |
6877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 41068553 - 41068617
Alignment:
| Q |
134 |
tgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtca |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41068553 |
tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca |
41068617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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